Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120548.Seq
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.21
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 30 0.48
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 1.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 28 1.5
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 28 1.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 28 1.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 2.6
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 3.4
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 26 5.9
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.1 bits (67), Expect = 0.21
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 517 LFEKSLLDDAEDSNNAANSDDTMLSESQAI-LKKLQIDIAEQTQLNIKRQLDLNKLQQTS 693
L EK L + + SN +++ + + + E+ +K+L+ ++ Q +L + ++LQ
Sbjct: 243 LNEKIQLFEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTALWESKSSELQSEV 302
Query: 694 VFMQEKLDRIKNDYNNMHKSFKECN*NEFQL 786
+QEKL ++ YNN+ +E N N+ QL
Sbjct: 303 AALQEKLTSQQSLYNNV---TEELNNNKQQL 330
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 595 SQAILKKL-QIDIA-EQTQLNIKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKEC 765
SQ +L+ L QI+++ +Q L I+ +NKL+QT M K + ++ + N+ K+ +C
Sbjct: 66 SQLVLQSLNQINMSMQQVALGIQDYASRINKLEQTMSDMNLKFEALQKEQNSNTKTLADC 125
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 508 ASVLFEKSLLDDAEDSNNAAN---SDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 678
A L +KSL A + A N S + LS +Q + ++Q + K Q +
Sbjct: 281 ARQLLQKSLSIVASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKA 340
Query: 679 LQQTSVFMQEKLDRIKNDYNNMHK 750
L + + +QE L+ +KND N+ +
Sbjct: 341 LLERNQSLQEALETVKNDEKNLRE 364
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 538 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK-LQQTSVFMQE-- 708
DD +D D ++ +S +KK++ D+ E + +L K Q + E
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFT 810
Query: 709 -KLDRIKNDYNNMHKSFKECN*NEFQLKRH 795
L++ +NDYN + EC E +L+ H
Sbjct: 811 PILEKSENDYNGVK---LECEQLEGELQNH 837
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 389 ESLHFNVYSINRNVVDVIKCSVTSVAQWNK 478
+ +H N YS+ R +V+ TSV W+K
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDK 648
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 556 NNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFM 702
NN + D+T+ +E+ KK + A L ++L LN +TS+F+
Sbjct: 524 NNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRLNSTLRTSIFV 572
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 508 ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIK 657
ASV E+S ++ A NNAA S + + S +++ + + ++AE Q ++
Sbjct: 845 ASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQARVE 893
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 389 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 484
+ LH N+YS+ R ++ V+ SV W +N
Sbjct: 78 KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 538 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 678
D E++ A+ S D L Q +KL +D +++ +KRQ+DL K
Sbjct: 14 DIEEETPLASKSFDPTLF--QHARRKLSVDSTKKSPKRLKRQVDLQK 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,060
Number of Sequences: 5004
Number of extensions: 55446
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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