Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120548.Seq
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    32   0.67 
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    31   1.5  
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421...    31   1.5  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    30   2.0  
10_01_0199 + 2164555-2165775                                           29   6.2  
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419           29   6.2  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 302 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 439
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 526 KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQ 705
           K  L + +D  N+   D  + +++ A + + + D++    L  K    +N  Q+   F +
Sbjct: 44  KFTLKEIQDRWNSLLYDPEISTQASARMVEYENDLSTSNPLKAKV---INAKQKDLSFQK 100

Query: 706 EKLDRIKNDYNNMHK 750
            K+D +KN Y  M K
Sbjct: 101 RKIDSVKNQYYAMRK 115


>01_01_0568 -
           4207812-4209587,4210056-4210291,4210647-4210793,
           4211857-4212145
          Length = 815

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +1

Query: 571 SDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHK 750
           S +  L++S++ + KL +++ E  ++N    L ++KLQ     MQE L     +  ++ K
Sbjct: 509 STEEALTDSRSEVSKLSVELDEANRMNQDLVLQISKLQDEFNEMQEGLTNKLGEVESVSK 568

Query: 751 SFKE 762
           +  +
Sbjct: 569 ALSD 572


>03_05_0754 +
           27452203-27452242,27452360-27455611,27456480-27456533,
           27456774-27456872,27456948-27457012,27457476-27457575,
           27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 502 LFASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQ-LNIKRQLDLNK 678
           L A+   EKSL ++ E    A N  ++ LSE    L++ +I + +Q Q L    +L +N 
Sbjct: 624 LIATTEIEKSLREEKEKLLGALNEANSALSEKNCELRQSEIILHQQKQALEHLEELRVNM 683

Query: 679 LQQTSVFMQEKLDRIKNDYNNMH 747
             +   ++ E +  +K D +  H
Sbjct: 684 ETEIKGYIDE-ICVLKRDLDATH 705


>10_01_0199 + 2164555-2165775
          Length = 406

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 102 FALDIKSFRKKLFSELIIWYPKNSGTYVGYSSYP 1
           F+LD+K+FR +    + I+  +NS T + Y+S+P
Sbjct: 366 FSLDLKTFRLERLCPMTIYQARNSPTEL-YTSFP 398


>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
          Length = 528

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 292 WYYSQSVYWLHKIFLIS-ATEKQMLHCNLTNSIFRRLHLRLFAENNTRRRTC 140
           WY+ Q+VY L   F++S   + ++    + NS   RL L LF  ++ R R C
Sbjct: 196 WYHLQAVYELLLRFVMSPVVDVKIARKYMDNSFVSRL-LDLFDSDDPREREC 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,086,106
Number of Sequences: 37544
Number of extensions: 332478
Number of successful extensions: 1011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)