Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120548.Seq
(856 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 31 1.2
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 1.6
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13) 29 3.6
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 3.6
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 4.8
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2) 29 6.4
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 29 6.4
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 29 6.4
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 6.4
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8) 29 6.4
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 28 8.4
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025) 28 8.4
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 28 8.4
SB_28707| Best HMM Match : rve (HMM E-Value=0.011) 28 8.4
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42) 28 8.4
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 18 RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 179
RR C FW + K L C+T +Q TL+ A A W+++ +VLFS N +
Sbjct: 524 RRARECIFWPGMPAEIKQLASVCDACQTFAKAQQKETLIAIEAKAPWEIVGVVLFSWNNK 583
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 31.1 bits (67), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 311 CKHQLCSMCXXXXXXXXXXPCPLCRV 388
C+H+ C MC CP+CR+
Sbjct: 52 CEHEFCKMCFTQNVQEANLQCPMCRI 77
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/80 (22%), Positives = 41/80 (51%)
Frame = +1
Query: 523 EKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFM 702
EK L ++ +S +T ++E+++++K+L E NIK +L L K+Q++
Sbjct: 1754 EKELYSAQQEIQPLKDSFNTAVAENESLVKELN----EANNKNIKLELTLEKMQKSQAQN 1809
Query: 703 QEKLDRIKNDYNNMHKSFKE 762
Q +++ + Y+ + +
Sbjct: 1810 QYQVEDALSKYSRSEEELMQ 1829
>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 257 FMQPIDRLTIIPVLELDTCKHQLC 328
F QP RL+ IPV+E C H +C
Sbjct: 47 FTQPCPRLSGIPVVEASVCHHIIC 70
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 550 DSNNAANSDD-TMLSESQAILKKLQIDIAEQTQLNI 654
D+ A SD+ T + + A+LKKL ID+ +T NI
Sbjct: 369 DAFTIAGSDEVTFILKKMAVLKKLPIDVLNRTLFNI 404
>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 637
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 18 RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 179
RR C FW + K L C+T +Q +TL+ A A W+++ + LFS N +
Sbjct: 450 RRARECIFWPGMSAEIKQLASVCDACQTFAKAQQKKTLITIEAKAPWEIVGVDLFSWNNK 509
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 704 CIKTLVCCNLFKSNCRLMLSCVCSAMSICSFFSIACDS 591
C+ + CC L C L++SC M CS +AC S
Sbjct: 4 CVLLMPCCVLLMPCCVLLMSCCVMLMWYCS-CRVACCS 40
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +1
Query: 544 AEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRI 723
A+D + S LSE QA+ +L+ + + +++ + + + LQQ + ++++ D I
Sbjct: 1097 AKDLDEVNASLQARLSELQAVNNELEEKLMDLSRVGEELKSENEGLQQKCLDLEKQRDTI 1156
Query: 724 KNDYNNMHK 750
K D ++ K
Sbjct: 1157 KQDLADVQK 1165
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 634 EQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKECN*NE 777
EQ N+ +NK + T + EK++ D + K FK C E
Sbjct: 2426 EQPVTNVSLMRQINKFRYTRTILFEKINMNTKDGELVQKGFKPCGKKE 2473
>SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)
Length = 226
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 265 LHKIFLISATEKQMLHCNLTNSIFRRLHLRL 173
L ++ + S E+QM NLTN + LH+RL
Sbjct: 102 LKEVLVPSLPERQMGQRNLTNKLLMNLHVRL 132
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 634 EQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKECN*NE 777
EQ N+ +NK + T + EK++ D + K FK C E
Sbjct: 1210 EQPVTNVSLMRQINKFRYTRTILFEKINMNTKDGELVQKGFKPCGKKE 1257
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 265 LHKIFLISATEKQMLHCNLTNSIFRRLHLRL 173
L ++ + S E+QM NLTN + LH+RL
Sbjct: 163 LKEVLVPSLPERQMGQRNLTNKLLMNLHVRL 193
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 265 LHKIFLISATEKQMLHCNLTNSIFRRLHLRL 173
L ++ + S E+QM NLTN + LH+RL
Sbjct: 337 LKEVLVPSLPERQMGQRNLTNKLLMNLHVRL 367
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +1
Query: 517 LFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSV 696
L ++L D+AE N + + + ++KKLQ+D E + Q L K +
Sbjct: 321 LRSRALADEAESILNNMEDTTEQIFQEKKVVKKLQVDEEEIKHRISELQNQLAKNKSKLS 380
Query: 697 FMQEKLDRIKNDYN 738
QE+ ++++ Y+
Sbjct: 381 ETQERCEKLEIRYD 394
>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
Length = 320
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 529 SLLDDAEDSNNAANSDDTMLSESQA---ILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVF 699
S+ DD+E++ N A++DDT+ + A +K I IAE T K D+ +
Sbjct: 12 SITDDSEETENHASTDDTVKKKVHADERSSRKYAIPIAELTTEMAKLLRDVKVFFTKDIN 71
Query: 700 MQEK 711
++ K
Sbjct: 72 LERK 75
>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
Length = 432
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 292 WYYSQSVYWLHKIFLISATEKQMLHCNLTNSIFRRLHLRLF 170
W + VY+++ I IS++ + N +FRR +LRLF
Sbjct: 204 WGKAALVYYVYGILAISSSAASPAIYAIFNPVFRRGYLRLF 244
>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
Length = 276
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 292 WYYSQSVYWLHKIFLISATEKQMLHCNLTNSIFRRLHLRLF 170
W + VY+++ I IS++ + N +FRR +LRLF
Sbjct: 211 WGKAALVYYVYGILAISSSAASPAIYAIFNPVFRRGYLRLF 251
>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
Length = 269
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 292 WYYSQSVYWLHKIFLISATEKQMLHCNLTNSIFRRLHLRLF 170
W + VY+++ I IS++ + N +FRR +LRLF
Sbjct: 204 WGKAALVYYVYGILAISSSAASPAIYAIFNPVFRRGYLRLF 244
>SB_28707| Best HMM Match : rve (HMM E-Value=0.011)
Length = 173
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 18 RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 179
RR C FW + K L C+T +Q TL+ A A W+++ + LFS N +
Sbjct: 30 RRARECIFWPGMSAEIKQLASVCDACQTFSKAQQKETLITKEAKAPWEIVGVDLFSWNNK 89
>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
Length = 331
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 292 WYYSQSVYWLHKIFLISATEKQMLHCNLTNSIFRRLHLRLF 170
W + VY+++ I IS++ + N +FRR +LRLF
Sbjct: 266 WGKAALVYYVYGILAISSSAASPAIYAIFNPVFRRGYLRLF 306
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,991,718
Number of Sequences: 59808
Number of extensions: 420517
Number of successful extensions: 1211
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -