Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120548.Seq
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38150.1 68418.m04598 expressed protein                             33   0.32 
At5g38130.1 68418.m04594 transferase family protein similar to a...    31   1.3  
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea...    30   2.3  
At5g27330.1 68418.m03263 expressed protein                             28   6.9  
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar...    28   9.1  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    28   9.1  

>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = +1

Query: 535 LDDAEDSNNAANSDDTMLSESQAILK----KLQIDI-AEQTQLNIKRQLDLNKLQQTSVF 699
           L+  + S NAA  ++ +  E + + K    K ++DI  ++++LN K   +L K++ T   
Sbjct: 349 LEKIKKSRNAAKKEEFLFKEEKTVTKAETQKTKLDIDKKESELNSKLD-ELEKVKHTEAL 407

Query: 700 MQEKLDRIKND 732
           + EKL+ +  D
Sbjct: 408 VLEKLESLVED 418


>At5g38130.1 68418.m04594 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 462

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 517 LFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLN 675
           L +K++LD    +NN  +++D  +S  QA++  L + I   + LN + +   N
Sbjct: 253 LSKKNILDLKAKANNEIDTNDLKISSLQAVVAYLWLSIIRHSGLNREEETQCN 305


>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, muscle
           (Swiss-Prot:P05661) [Drosophila melanogaster]
          Length = 468

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 523 EKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFM 702
           EKS    ++ S   A  DD++    +  LK+L+  + ++T+ + K QL  +  Q  ++ M
Sbjct: 340 EKSRSQSSKGSGLRAKPDDSVSMHQRVCLKELEEGLEKRTRRDNKLQLKKSSGQVLNLSM 399

Query: 703 QEKLDRI 723
             + D+I
Sbjct: 400 SSEGDKI 406


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/67 (20%), Positives = 38/67 (56%)
 Frame = +1

Query: 589 SESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKECN 768
           S+ + ++++L  +  E  Q  + ++ ++ +L + +   +  + +++ DYN+  K+ ++ N
Sbjct: 364 SDKEKLVEQLLREKNELVQRVVNQEAEIVELSKLAGEQKHAVAQLRKDYNDQIKNGEKLN 423

Query: 769 *NEFQLK 789
            N  QLK
Sbjct: 424 CNVSQLK 430


>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
           to  M protein, serotype 5 precursor (SP:P02977)
           {Streptococcus pyogenes} and to Myosin heavy chain,
           non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
           {Drosophila melanogaster}
          Length = 537

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 559 NAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYN 738
           +A N  DT+ S+   +L+KLQ    E    +++RQ  ++ L+Q +VF++++   +  D  
Sbjct: 86  SADNVSDTLSSDYDVMLRKLQ--ETELRNEDLERQ--VSNLKQETVFLRDQNMEVAGDIE 141

Query: 739 NMHKSFKE 762
                 +E
Sbjct: 142 GKRNEDRE 149


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +2

Query: 299 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 400
           E+ TC H     C           CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,609
Number of Sequences: 28952
Number of extensions: 278860
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)