Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.0  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    26   4.6  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    26   4.6  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   6.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 56  TRETIVDIINSYHNACQNLKRSGHRVVGDYRAYERDYKLAALDFIIL 196
           T   IV +I  Y+N  + + + G++  G + AY   +    +DF+ L
Sbjct: 268 TSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHADVMDFLEL 314


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 396 T*NSTRKASLYNDIIF--TQTYESYINHVY*LAQTNESYIIVFINLQKPSSMNYVINHVY 569
           T N +  ++L    IF  +Q  E+Y+ H+  + +  +   I+F+N  + + + Y I  + 
Sbjct: 222 TDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLL 281

Query: 570 *LAPTMSHT 596
            L  T  H+
Sbjct: 282 ELRVTELHS 290


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +1

Query: 169 ISRFRFYYFDARHQHYTSHFEIQHAKHTRKMFQELKTIVCKHSAAKLYDILINYDINKEP 348
           ++  R +   A H  Y  +     +KH +K+        C +     Y I I Y+I  + 
Sbjct: 230 VALLRAFSLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDD 289

Query: 349 LNNFRYNY 372
           L   + NY
Sbjct: 290 LGFVQPNY 297


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 331 DINKEPLNNFRYNYEVL*SCFTRKILLVKRVCTMTSFLHKHMNHI 465
           D+ + P+     N+E+   CF  K+L +     +  FL++  N++
Sbjct: 78  DVKERPVKELELNFEIKGICFDGKLLAIATASKL--FLYQFGNNL 120


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 308 SLAALCLHTIVFNS*NIFRVCLACCISKCD 219
           S   L  H + F++  +FR  L C I++C+
Sbjct: 745 SFFVLLHHAVDFDAPEVFRPLLDCIITRCE 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,807
Number of Sequences: 5004
Number of extensions: 61051
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)