Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    30   2.1  
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    29   3.6  
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909     29   3.6  
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778...    29   4.8  
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669...    28   8.4  
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019...    28   8.4  

>10_08_0838 -
           20927020-20927207,20927288-20927491,20927654-20928297,
           20928549-20928788,20928884-20928978,20929087-20929434,
           20929824-20930042,20930422-20930487,20931191-20931362,
           20931456-20931703,20931933-20932073,20932238-20932330,
           20932421-20932471,20933571-20933693,20933793-20934035,
           20934131-20934211,20935245-20935340,20935535-20936320,
           20936443-20937012,20937322-20937427,20938102-20938206,
           20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 211 HYTSHFEIQHAKHTRKMFQELKTIV--CKHSAAKLYDILINYDINKEPLNNFRYNYEVL* 384
           H  S F  + A  +R     L T++  C  ++A +Y++L N  +  E   N   N   L 
Sbjct: 332 HGQSQFHQEVAILSRVRHPNLVTLIGACTEASALVYELLPNGSL--EDRLNCVDNTPPL- 388

Query: 385 SCFTRKILLVKRVCTMTSFLHKHMNHILI 471
             +  +I ++  +C+   FLHKH  H ++
Sbjct: 389 -TWQVRIQIITEICSALIFLHKHRPHPVV 416


>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 175 RFRFYYFDARHQHYTSHFEIQH 240
           RFRF  F++ HQHY  +++  H
Sbjct: 356 RFRFAGFNSMHQHYAKNYDDTH 377


>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
          Length = 627

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 193 FDARHQHYTSHFEIQHAKHTRKMFQELKTIVCKHSAAKLYDILINYDINKEPL 351
           F  +HQH+ +H   ++    ++ F+ L   +    AA+L+D+L N +  KE +
Sbjct: 196 FYDQHQHFGAHGHGEYDAAPQQSFKGLSGPLPVDVAAELHDVLTNLNGTKESI 248


>02_02_0587 +
           11875678-11877234,11877606-11877608,11877755-11877823,
           11878605-11878719,11879139-11879248
          Length = 617

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 206 TSITHRTLKYNMLNI--HEKCFKN*KRLCANTAPPNCTTY 319
           T++ +  L +N +++   ++C K  K +  N  PPN  TY
Sbjct: 318 TTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTY 357


>06_03_1072 +
           27365834-27365945,27366360-27366464,27366844-27366929,
           27367445-27367631,27368031-27368142,27368235-27368337,
           27368424-27368469,27368670-27368708,27368803-27368959,
           27369031-27369133,27369337-27369453,27369880-27369957,
           27370044-27370145,27370252-27370345,27370432-27370542,
           27370643-27370707,27370949-27371097,27371349-27371581,
           27371778-27371908,27372016-27372126,27372210-27372326
          Length = 785

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 292 HSAAKLYDILINYDINKEPLNNFRYNYEVL*SCFTRKILLVKRVCTMTSFLHKHM 456
           H+ A LY      D+ K+  +N   N     +CF  K+ L +  CT TS L+  M
Sbjct: 46  HAGATLYSEAQMADVLKDLASNVYGNPRSCMNCFDSKV-LQQGACTATSLLYPVM 99


>05_03_0418 +
           13700855-13700942,13701602-13701728,13701845-13701916,
           13702079-13702153,13702290-13702361,13702477-13702638,
           13702726-13702800,13702880-13702951,13703040-13703108,
           13703196-13703264,13703355-13703429,13703522-13703593,
           13703668-13703737,13703920-13704361,13704442-13704573,
           13704664-13704803,13704910-13705129,13705301-13705536,
           13705732-13706256
          Length = 930

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 313 DILINYDINKEPLNNFRYNYEVL*SCF 393
           D  +N DI   P+N  R+NY  + +CF
Sbjct: 459 DAYLNVDIRACPVNQKRFNYSQVLNCF 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,822,004
Number of Sequences: 37544
Number of extensions: 317541
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)