Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22369| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_13348| Best HMM Match : Transposase_5 (HMM E-Value=1.1)             28   6.5  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_22369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 448 CVKMMSLYKLALRVEFYV*NTITALRSCIENCSRALC*CRN 326
           C   MS+Y +AL    Y   T T+L  C++ CSR  C CR+
Sbjct: 30  CRDSMSIYDVALIGHAYKHVTATSLHDCVKLCSREKC-CRS 69


>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 62  ETIVDIINSYHNACQNLK 115
           E I+DI+  +HNACQN K
Sbjct: 411 ENIIDILRKHHNACQNDK 428


>SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +1

Query: 187 YYFDARHQH----YTSHFEIQHAKHTRKMFQELKTIVCKHSAAKLYDI-LINYDINKEPL 351
           Y F  ++Q+    Y+   + Q++  T    ++ +  + K+S  K Y   L+ Y   +   
Sbjct: 361 YSFTRKYQYSLVTYSFTRKYQYSLVTHSFTRKYQYSLVKYSFTKKYQYSLVKYSFTR--- 417

Query: 352 NNFRYNYEVL*SCFTRKILLVKRVCTMTSFLHKHMN 459
              +Y Y ++   FT+K  +V+  CT  S   K +N
Sbjct: 418 ---KYQYSLVKYSFTKKYQMVQESCTGISKCQKTIN 450


>SB_13348| Best HMM Match : Transposase_5 (HMM E-Value=1.1)
          Length = 255

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 374 KCCDRVLHVKFYS*SEFVQ*HHFYT 448
           KC D +LHVK +S  + V  H  YT
Sbjct: 142 KCFDSILHVKLHSIMKHVLTHQLYT 166


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 307  VWRRCVCTQSFLIL 266
            +W  CVCT+SFL+L
Sbjct: 1373 IWAACVCTKSFLLL 1386


>SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = +2

Query: 95  NACQNLKRSGHRVVGDYRAYERDYKLAALDFIILMLVTSITH 220
           NA +   ++  +++ D+R YE+  KL+  +F +++ +++  H
Sbjct: 61  NAWKRKNKTAFQLITDFRRYEKVAKLSTRNFNLVIKISAAPH 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,337,046
Number of Sequences: 59808
Number of extensions: 447171
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)