Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein ...    34   0.22 
AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein ...    34   0.22 
AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p pro...    33   0.38 
AJ000387-2|CAA04049.1|  343|Drosophila melanogaster Gag protein ...    31   1.5  

>AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein
           protein.
          Length = 377

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 560 SRLLTCTNNESYTNHVYQLAKIKFNELCLNMFINSHKQMSHTLI 691
           S+L +   N  + N V    K+ +NE+CLN F+   K+   T +
Sbjct: 200 SQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFV 243


>AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein
           protein.
          Length = 373

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 560 SRLLTCTNNESYTNHVYQLAKIKFNELCLNMFINSHKQMSHTLI 691
           S+L +   N  + N V    K+ +NE+CLN F+   K+   T +
Sbjct: 200 SQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFV 243


>AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p
           protein.
          Length = 347

 Score = 33.1 bits (72), Expect = 0.38
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
 Frame = +2

Query: 296 APPNCTTY*SITTLTKSP*TIFDTTTKCCDRVLHVKFYS*SEFVQ*HHFYTNI*IIY*SR 475
           AP   TT    TT T +P T   TTT C +   ++   + +     +H+  N+     + 
Sbjct: 182 APTTTTTCAPTTTTTCTPTT---TTTLCTNNHNNLCTNNHNNLCTNNHY--NLCTNNHNN 236

Query: 476 LLTCTNK*VIHNRVYQLAKTKFNELCY*SRLLTCTNNES--YTNHV-YQLAKIKFNELC 643
           L T  +  +  N  Y L     N LC  +    CTNN +  YT +  Y +     N LC
Sbjct: 237 LCTNNHNNLCTNNHYNLCTNNHNNLCTNNHYNLCTNNHNHVYTRYYNYDMYTSNHNNLC 295


>AJ000387-2|CAA04049.1|  343|Drosophila melanogaster Gag protein
           protein.
          Length = 343

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 560 SRLLTCTNNESYTNHVYQLAKIKFNELCLNMFINSHKQMSHTLI 691
           S+L++ T+N   +  + +  K  ++E+CLN FI+  ++   T+I
Sbjct: 198 SQLISITSNSGQSATIIEAKKTLYDEVCLNAFISRIREPLKTVI 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,310,008
Number of Sequences: 53049
Number of extensions: 630491
Number of successful extensions: 1298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)