Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin prot...    29   4.3  
AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin prot...    29   4.3  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical
           protein R03G8.3 protein.
          Length = 654

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -2

Query: 455 ICLCKNDVIVQTRFTSRILRVKHDHSTS*L-YRKLFKGSLLMS*LINMS 312
           + L  N+ I + +FT + +++K DH  S L + + FKGS+L + ++ M+
Sbjct: 545 VALAVNNEIEEGKFTDKCVKMKVDHVVSLLQFDQKFKGSMLYTAVVEMT 593


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -1

Query: 420 SLYE*NFTCKTRSQHFVVVSKIVQGLFVNVVID*YVVQFGGAVFAHNRF*FLKHFSCMFS 241
           SL+   F C + SQ F+     +Q  +++V     V QF   +   +    LKHF C+++
Sbjct: 113 SLFVIVFLCLSLSQPFI----FLQSQYISVFC--CVFQFANQILLQSDGLNLKHFKCLYT 166

Query: 240 MLYFKVRC 217
             +   RC
Sbjct: 167 STFLLFRC 174


>U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical
           protein F18G5.4 protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 172 SRFRFYYFDARHQHYTSHFEIQHAKHTRKMFQELKTI 282
           SR  F   D+R ++ T+HFEI  AK  +K   E  TI
Sbjct: 33  SRVHFSLLDSRQENDTNHFEIAEAKF-QKPHNEENTI 68


>AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin protein
           18, isoform b protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 40  NRQTDNKRNYSGYYQFVP*RLSKSKKIW--PQSCWRLQSV*TGL 165
           +R  D +R   GYYQ+VP  L+ +   +  P S WR+ +  +GL
Sbjct: 93  HRLDDRERRQIGYYQWVPFVLAVAALTFHIPSSVWRMLAGQSGL 136


>AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin protein
           18, isoform a protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 40  NRQTDNKRNYSGYYQFVP*RLSKSKKIW--PQSCWRLQSV*TGL 165
           +R  D +R   GYYQ+VP  L+ +   +  P S WR+ +  +GL
Sbjct: 93  HRLDDRERRQIGYYQWVPFVLAVAALTFHIPSSVWRMLAGQSGL 136


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 509 YV*LICL-CKLINVINI*FICLCKNDVIVQTR 417
           ++ LIC+ C   N+I + F  +C NDVI++ +
Sbjct: 35  FIGLICITCTNANMILMNFTVICMNDVIIEQK 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,650
Number of Sequences: 27780
Number of extensions: 344060
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)