Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120547.Seq
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr...    29   3.0  

>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 509

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +3

Query: 351 EQFSIQLRSAVIVFYT*NSTRKASLYNDIIFTQTYESYINHVY*LAQTNESYIIVFINLQ 530
           EQ  IQLR         N T + SL  D I +    S I   Y + QTN +  IV ++L+
Sbjct: 201 EQGLIQLRKTTRS----NETTRISLCTDRILS-LLRSLIVSRYNIVQTNAAASIVNLSLE 255

Query: 531 KPSSMNYV 554
           KP+ +  V
Sbjct: 256 KPNKLKIV 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,439
Number of Sequences: 28952
Number of extensions: 285458
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)