Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120546X.Seq
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.62 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.5  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    23   2.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 218 IVLS*TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLS 72
           ++ S T P++   L    L N I +++  +GS    A TD   K F++S
Sbjct: 348 LMFSATFPEEVQQLAGKFLLNYIFIAVGIVGS----ACTDVEQKFFQVS 392


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 470 LSTRRETRASSSQARSAHPTPRPVINLFARANAVAPA 580
           ++ R   RA+  Q R+    PRP I+        APA
Sbjct: 312 IAPRERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPA 348


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 573 ATALARANKFITGRGVGWADLACD 502
           AT +   N++    GVGW    CD
Sbjct: 112 ATCVQNKNQYQCLCGVGWTGKVCD 135


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 323 CIGSSIFNRNLFISKYNAIALIVPT 249
           C G   F +NL +   N + L V T
Sbjct: 38  CYGRHFFKKNLIVGSENCLVLNVYT 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,080
Number of Sequences: 336
Number of extensions: 2567
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)