Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120546X.Seq
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        29   0.65 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.6  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   4.6  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   6.1  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    25   6.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   6.1  

>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 213 HDPSDSYRVSVRRRHDERYRVVFGNKQIAVKNRRAYAIGDMAPD 344
           H+P++ Y +  RR HD+    + G+     +  R   I D +P+
Sbjct: 67  HEPANVYSIEQRRSHDDDLPTIKGSDASTQQYERKTYITDASPE 110


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = -3

Query: 413 IIKFINTSVFNCTF*CSSQSKGNIWGHIANCIGSSIFNRNLFISKYNAIALIVPTTHTYS 234
           ++++ +T+VF        Q+ GN W  I  CIGS    + + + +   I  I+ TT  Y 
Sbjct: 655 LVEYYDTAVF-----AIMQNPGNDWDMIRACIGS----KEILVPE-ETIKNILFTTLEYF 704

Query: 233 VTITWI 216
           +T  W+
Sbjct: 705 LTNDWV 710


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  QTAASLLINDITPNKTESLKIL 90
           Q  A  LIND+ PNK   L I+
Sbjct: 462 QNIAQYLINDVVPNKDGDLSIV 483


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 LCDEHQNVQLNTDVLINFI 411
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 310 DEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 408
           D  +Q AI+   +PL CD+ +   L+T + I F
Sbjct: 140 DASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 107 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSK 223
           E   C N   P  P+++ +  + S     +G+ +TTRSK
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSK 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,429
Number of Sequences: 5004
Number of extensions: 41051
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)