Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120546X.Seq
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    34   0.095
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655...    29   2.7  
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558...    29   3.6  
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694...    28   6.2  
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694...    28   6.2  

>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = -3

Query: 347 NIWGHIANCIGSSIFNRNLFISKYNAIALIVPTTHTYSVTITWIVLS*TLPKKSNTLTVS 168
           N+ G I + +G+S+    + ++  N +  ++P +   S ++  ++LS      S  +   
Sbjct: 195 NLEGDIPDSLGTSLSLSYVNLAN-NTLTGVIPDSLASSPSLNMLILSRN--NLSGQIPAK 251

Query: 167 ILFNLILVSLACIGSNRL--RAPTD*VDKIFKLSVL 66
           +  N   +++AC+G+NRL  + P+D  + + KL +L
Sbjct: 252 LFSNSSKLTIACLGNNRLVGQIPSDIGNSLPKLQIL 287


>04_04_1079 -
           30663919-30665044,30665143-30665298,30665405-30665563,
           30665640-30665770,30666230-30666315,30666607-30666673,
           30666944-30667023,30667173-30667260,30667380-30667428,
           30667516-30667608,30667725-30667808,30667986-30668044,
           30668293-30668327,30668416-30668718,30669111-30669275,
           30669701-30669780,30670932-30671003,30671143-30671234,
           30671359-30671433,30671552-30671688,30671763-30671890,
           30671942-30672033,30672473-30672808
          Length = 1230

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 479 RRETRASSSQARSAHPTPRPVINLFAR 559
           R+  R SSS +R+A P PRPV    AR
Sbjct: 883 RKRGRPSSSASRTAKPAPRPVRRTRAR 909


>02_05_0308 -
           27754340-27754634,27755591-27755696,27755781-27755855,
           27756039-27757410
          Length = 615

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -2

Query: 294 FVYFQIQRDSAHRADDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGLHRFQQI 115
           F    I   S HR       C YHL  V   AP ++  +     +QL FG++G     Q+
Sbjct: 456 FNQHHISFKSTHRWSYDESNCKYHLIIVFERAPTEIFSLSLL--VQLQFGMIGSKAVYQM 513

Query: 114 ARSD 103
              D
Sbjct: 514 IYGD 517


>01_06_1604 +
           38567374-38567391,38567505-38567636,38569377-38569445,
           38569545-38569775,38570883-38571013,38571471-38571629,
           38573078-38573366
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 292 KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 441
           K RLK++ P    I      ++ D   +  +N + L++ + HV    +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194


>01_02_0036 +
           10468636-10468938,10469014-10469109,10469247-10469453,
           10470762-10471097,10471469-10471582,10471634-10471639
          Length = 353

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 414 HYKIYQHVGVQLHVLMFVAEQRKYLGPYRQLHRLVYF*PQFVYFQIQRDSAHRADDAHLL 235
           H K      V + +   V E R+  G   +L+R  Y      Y Q+ +   HR  D HL+
Sbjct: 132 HRKEATTAAVDVELRRVVEENRRLRGMLDELNRS-YSALYHQYLQVTQQQNHRHPDHHLI 190

Query: 234 CNYHLDR 214
            N + +R
Sbjct: 191 MNNNNNR 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,924
Number of Sequences: 37544
Number of extensions: 255518
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)