Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120546X.Seq
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   5.6  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   5.6  
AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 49  NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 168
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 49  NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 168
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical
           protein C52E2.6 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +1

Query: 55  ITPNKTESLKILSTQSVGARNLLEPMQANETK--IKLNRIETVNVLDFLGSVYDNTIQVI 228
           I+PN   +L I    S    +   P+     K  + L RI +  + +F   ++    +++
Sbjct: 6   ISPNSVSTLNIQPPTSFSVSSPPFPILRLPPKPFVPLFRILSSRICEFNFELFSMLTKIL 65

Query: 229 VTE*-VCVVGTMSAIALYLEINKLRLKIDEPMQLAIW 336
           +     C++   S   L +E   +R+ +D  M + +W
Sbjct: 66  IFRMNFCLISPTSGKLLNIESGNVRVVLDHLMAIIVW 102


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 277 YLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 408
           Y   +  + KI   +QL I P    +LC   +++ +NT  L NF
Sbjct: 206 YTSCHAKQAKITPGLQLGILPYAHQVLCSNFEHLDINTSSL-NF 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,363
Number of Sequences: 27780
Number of extensions: 238237
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)