Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120546X.Seq
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste...    31   0.42 
At5g58170.1 68418.m07281 glycerophosphoryl diester phosphodieste...    29   1.7  
At3g58760.1 68416.m06549 ankyrin protein kinase, putative simila...    27   6.9  
At3g10120.1 68416.m01214 expressed protein                             27   6.9  
At3g05680.1 68416.m00634 expressed protein                             27   9.1  
At2g20585.1 68415.m02405 expressed protein                             27   9.1  

>At5g58050.1 68418.m07265 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 753

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 368 CSSQ-SKGNI-WGHIANCIGSSIFNRNLFISKYNAIALIVPTTHTYSVTITWIVLS*TLP 195
           CS Q SK  I + H A  + +S   R  F+S+  ++  I PT   +S  +TW  +    P
Sbjct: 388 CSVQMSKDGIAFCHDAADLSASTTARTTFMSRATSVPEIQPTNGIFSFDLTWAEIQSVKP 447

Query: 194 KKSNTLTVS 168
           +  N  T +
Sbjct: 448 QIENPFTAT 456


>At5g58170.1 68418.m07281 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 750

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 368 CSSQ-SKGNI-WGHIANCIGSSIFNRNLFISKYNAIALIVPTTHTYSVTITWIVLS*TLP 195
           CS Q SK  I + H A  + +S     +F+S+  ++  I PT   +S  +TW  +    P
Sbjct: 388 CSVQMSKDGIAFCHDAADLTASTTAMTIFMSRATSVPEIQPTNGIFSFDLTWAEIQSVKP 447

Query: 194 KKSNTLTVS 168
           +  N  T +
Sbjct: 448 QIENPFTAT 456


>At3g58760.1 68416.m06549 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 471

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 157 LNRIETVNVLDFLGSVYDNTIQVIVTE 237
           L +I   NV+ FLG+V  +T  +IVTE
Sbjct: 213 LQKIRHPNVVQFLGAVTQSTPMMIVTE 239


>At3g10120.1 68416.m01214 expressed protein
          Length = 173

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 348 KYLGPYRQLHRLVYF*PQFVYFQIQRDSAHRADDAHLLC 232
           +Y GP +  H L  F P +  F    ++ H    A LLC
Sbjct: 23  EYRGPMKVHHILTQFSPHYSLFDSLTNNCHLHPQAKLLC 61


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43   LINDITPNKTESLKILSTQSVGARNLLEPM-QANETKIKLNRIETVNVL 186
            LIN +TPN  +  KI+   +V A  +++ M +    +I   R+E  ++L
Sbjct: 1008 LINHLTPNLDKIAKIIQHHAVSALVVIQDMLRVFIVRIACQRVEHASIL 1056


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 579 AGATALARANKFITGRGVGWADLACDDD 496
           A A+AL  +   I+G+  GW   AC+DD
Sbjct: 72  ATASALMTSKLSISGQTYGWLSDACNDD 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,220
Number of Sequences: 28952
Number of extensions: 208472
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)