Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120545.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   0.50 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   1.5  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   1.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.7  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.5  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.5  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   8.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 405 SFKDMEEGKCYDISLNYVKTKFSQMIQ 485
           +FK+ +EG+ YD SL +VKT FS  IQ
Sbjct: 844 AFKETQEGENYDTSL-FVKTAFSFEIQ 869


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 342 YYYTFRIMSDNKIQEYYGDSQS 407
           Y+Y   I  +N IQE+Y D +S
Sbjct: 623 YFYQLEIAEENAIQEWYSDPRS 644


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 10  IFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 174
           +++ G+++  SKRV K   V  + N      +   W H D   ++YLP +++ H+
Sbjct: 174 MYEEGWIEFESKRVAKS--VAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -3

Query: 168  WESIRWQILNGDEIEVSPEHRSLAWRELIINVANN------TPLDNTFRTMFQKADF 16
            ++S++WQ +  DE +      S  W+ L+     N      TP+ NT + ++    F
Sbjct: 966  FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/94 (23%), Positives = 40/94 (42%)
 Frame = +3

Query: 246 HGYANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSDNKIQEYYGDSQSFKDMEE 425
           +GY     +I    +   G+ +  +  + +N Y+ T +  +D +I  Y G     K +  
Sbjct: 461 YGYIGVISRIVPTGRFSAGQNLTDLVSTQENSYFSTHQQFADARIGNYLGIQSLRKCLIN 520

Query: 426 GKCYDISLNYVKTKFSQMIQINEYKECEWKLKLQ 527
              Y +S N   T  S      E +EC ++ K+Q
Sbjct: 521 VLEYTMSKNLQHTADSIR---TELEECNYQYKVQ 551


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 105 SLAWRELIINVANNTPLDNTFRTMFQKADFEN 10
           +L W+E + NV+NNT L      +    +F N
Sbjct: 225 ALEWKEKVYNVSNNTLLSEAHYKLALALEFTN 256


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 136 AIQYLPSYRFPHIDNNSNMATKRFFSGESSGEPLIKRMAMLIAPR 270
           +I YLPSY+ P   N SN+A   F   E+ G+ +     +LI  +
Sbjct: 443 SIDYLPSYKPP--SNGSNIAINAF--NETVGDRIPSSKDILITEK 483


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 619  DFLVNKFGLYNNIDAIFVFKMF 554
            DFL N  GL+NN+ A  VF MF
Sbjct: 2696 DFLGNPVGLFNNV-ASGVFDMF 2716


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 275 NLLGAISIAMRFI--SGSPLLSPEKN 204
           N+LG   IA R I  +G PLL PEK+
Sbjct: 586 NMLGKTGIADRSIEINGLPLLEPEKS 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,142
Number of Sequences: 5004
Number of extensions: 58188
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)