Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120545.Seq
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   2.8  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    28   6.4  
12_02_0189 + 15165485-15168694                                         28   8.5  

>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 252 YANSPKKIRENYKRINGKLMGKMTLSI 332
           YAN+ K  ++  K++ GK+M +MT+ I
Sbjct: 644 YANAIKNTKQKIKQLTGKIMEQMTIQI 670


>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +2

Query: 536  SAYLTNKHFEN---EDSVNIIV---KSKFIYKKINSNLYKIVFEVAYKNFNDDSDVVQVE 697
            +AYL ++H EN   E   N  +   +  ++ +K+ +N+ KI+ + +  N  DDS  +QV+
Sbjct: 1834 NAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIAKGSANNLCDDSTPLQVD 1893


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 144  LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 4
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,365
Number of Sequences: 37544
Number of extensions: 323678
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)