Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120545.Seq
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)                    29   3.8  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  

>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 155 RIDSHILTTTAIWRPKDFFLEKVAVSRL 238
           RI   +LT   +WRPKD F+E   ++++
Sbjct: 6   RICERLLTNDDVWRPKDSFVETKPLAKV 33


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 327  SIDNEYYYTFRIMSDNKIQEYYGDSQSFKDMEEGKCYDISLNYVKTKFS----QMIQINE 494
            +++N++Y  +    D  IQ YY D  + + ++  +   +  N++  +FS     +  ++E
Sbjct: 2055 TLNNKWYRGYIESCDGGIQIYYPDYGNTEIIDVSRLRPLEQNFLSLRFSALKCALSDMDE 2114

Query: 495  YKECEW 512
             ++C W
Sbjct: 2115 QEQCGW 2120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,308
Number of Sequences: 59808
Number of extensions: 409508
Number of successful extensions: 1159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)