Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120545.Seq
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.     29   4.4  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    28   5.8  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    28   5.8  
AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 327 SIDNEYYYTFRIMSDNKIQEYYGDSQSFKDMEEGKCYDISLNYVK 461
           S D +  Y   I + N IQ +Y    SFK+  + K + + + Y+K
Sbjct: 292 SFDEKLKYIVGINNFNMIQNFYSHPCSFKNFAQEKDFLLGIGYLK 336


>Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical
           protein ZC168.4 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 563 ENEDSVNIIVKSKFIYKKINSNLYKIVFEVAYKNF 667
           E E++V++I K     KK+  +   ++ EV+YKNF
Sbjct: 280 EAENAVSVICKQLGASKKVIEDAVALLAEVSYKNF 314


>U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 563 ENEDSVNIIVKSKFIYKKINSNLYKIVFEVAYKNF 667
           E E++V++I K     KK+  +   ++ EV+YKNF
Sbjct: 280 EAENAVSVICKQLGASKKVIEDAVALLAEVSYKNF 314


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 635 KIVFEVAYKNFNDDSDVVQVECFCQCE 715
           K+ F    K  +D++ VVQ EC  QC+
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQ 230


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 635 KIVFEVAYKNFNDDSDVVQVECFCQCE 715
           K+ F    K  +D++ VVQ EC  QC+
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQ 230


>AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical
           protein Y48B6A.1 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 366 SDNKIQEYYGDSQSFKDMEEGKCYDISLNYVKTKFSQMIQINEY 497
           S N  +EY  D +  K  EE +  D  LN++ +K+  + ++ +Y
Sbjct: 244 SYNPPEEYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQY 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,465
Number of Sequences: 27780
Number of extensions: 324580
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)