Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120545.Seq
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    29   4.1  
At4g33750.1 68417.m04792 expressed protein                             27   9.4  
At3g58920.1 68416.m06566 F-box family protein contains F-box dom...    27   9.4  

>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
            family protein similar to SP|Q9Z1T6 FYVE
            finger-containing phosphoinositide kinase (EC 2.7.1.68)
            (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
            (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
            profiles PF01504: Phosphatidylinositol-4-phosphate
            5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
            chaperonin family
          Length = 1791

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 512  EIETAIPLSAYLTNKHFEN-EDSVN-IIVKSKFIYKKINSN 628
            E + A P+S  L +K++EN EDSV+ + V     Y+ IN N
Sbjct: 1313 EFKVAYPVSPALPSKNYENSEDSVSWLSVPFLNFYRSINKN 1353


>At4g33750.1 68417.m04792 expressed protein 
          Length = 148

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 512 EIETAIPLSAYLTNKHFENEDSVNIIVKSKFIYKKINSNLYKI 640
           E +  IP+SA +TNK F  ++S N   +S  +     SN  ++
Sbjct: 31  ESDPDIPISADITNKDFIQDESRNSTSESSLLENIAGSNTTEV 73


>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 656 YKNFNDDSDVVQVECFCQC 712
           Y++FNDD +  + E +C+C
Sbjct: 373 YRDFNDDEEEEEPEYYCEC 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,284
Number of Sequences: 28952
Number of extensions: 285578
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)