Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120544.Seq
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 113 1e-26
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 27 1.6
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 2.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 6.5
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 6.5
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 8.6
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 8.6
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 113 bits (273), Expect = 1e-26
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = +3
Query: 255 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAK 434
M+SGPV M+WEG VKTGR MLGA+NP DS PGTIRGD I +GRN+ HGSDS+ESA
Sbjct: 67 MASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESAN 126
Query: 435 KEIGLWFTDKEVVGWTPANENWVYD 509
+EI LWF E+ + E W+Y+
Sbjct: 127 REIKLWFQPSEIQVYDRTIEPWIYE 151
Score = 78.2 bits (184), Expect = 9e-16
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +1
Query: 67 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 246
E+TFI VKPD VQRGL+G II +FE KG+KL LKF+ PS +L+++HY++ +PF+ L
Sbjct: 4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63
Query: 247 V 249
V
Sbjct: 64 V 64
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 198 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 25
++F W Y+ ++ D L ET N K T+RL H L+LF +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 470 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 294
N FV P R + RT+ TP+L E ++ R+S V C H +S N
Sbjct: 5 NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62
Query: 293 ALPYHRDHR 267
++ R H+
Sbjct: 63 SVRNTRTHK 71
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 152 KPFFSKRSIMVPTRPRCTPSGLT 84
KPF +KRS ++P RP T L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 509 IINPVFICRCPAHNFFVRKPEAYFLFSRF 423
+INPVF R PAH K + F+ S F
Sbjct: 72 VINPVFDPRKPAHELKGNKRDNTFVTSLF 100
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +3
Query: 291 GLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 407
GL +++ G ++ T+P+ GT+ GD C+++G NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = -1
Query: 437 LFSRFNAVRTMDDVTPNLNAEITADSAGLRV-SWVSCAKHLTASLHNIKALPYHRDHRS* 261
+F + +R D +T + + + GL++ S + SLH LPY + +
Sbjct: 751 VFYKEVGMRLFDSLTRYIKSHKFSVDGGLKLLSDCNLYYEFIHSLHQSSLLPYFKTLKEI 810
Query: 260 THYFTRPGKKGRDAKSL 210
H F GK + L
Sbjct: 811 AHLFIIDGKNAEEIGKL 827
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 273 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 440
+ V EG N + GRQ+L T+P + + +G I H SD + + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447
Query: 441 IGLWFTDKEV 470
F+ E+
Sbjct: 448 SAFGFSAMEL 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,275
Number of Sequences: 5004
Number of extensions: 49444
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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