Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120544.Seq
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        130   9e-31
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  130 bits (314), Expect = 9e-31
 Identities = 58/87 (66%), Positives = 66/87 (75%)
 Frame = +3

Query: 249 KVMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVES 428
           K MS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD  I +GRNIIHGSD+VE+
Sbjct: 700 KYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVET 759

Query: 429 AKKEIGLWFTDKEVVGWTPANENWVYD 509
           AK+EI LWF D E+V WTP N  W+Y+
Sbjct: 760 AKEEIALWFKDDELVDWTPCNNPWMYE 786



 Score =  101 bits (243), Expect = 3e-22
 Identities = 48/62 (77%), Positives = 54/62 (87%)
 Frame = +1

Query: 67  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 246
           ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+DLA  PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186

Query: 247 VK 252
           VK
Sbjct: 187 VK 188



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/62 (61%), Positives = 46/62 (74%)
 Frame = +1

Query: 67  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 246
           ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY  LA   F+ GL
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698

Query: 247 VK 252
            K
Sbjct: 699 CK 700



 Score = 34.3 bits (75), Expect = 0.078
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 342 ADSQPGTIRGDLCIQVG 392
           ADS+PGTIRGD C+ +G
Sbjct: 199 ADSKPGTIRGDFCVHIG 215


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 255 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSDSVE 425
           MSSGP + MV    + V   R ++G  +P  ++   P +IR  L   V +N++HG    E
Sbjct: 735 MSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPSDPE 794

Query: 426 SAKKEIGLWFTDKEVV 473
            A K I  +F + +++
Sbjct: 795 KAGKVIKEFFPEAKIL 810



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +3

Query: 255 MSSGPVVPMVWEGLNVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIHGSDSV 422
           MSSGP++ +     + ++  R MLG        D  P ++R    ++    N +HGSD+ 
Sbjct: 600 MSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLHGSDTA 659

Query: 423 ESAKKEIGLWFTDKEVV 473
           E+A+KEI  +F  +  V
Sbjct: 660 ENAEKEIQKFFPMQSTV 676



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +1

Query: 61  QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 240
           Q +RT  +++PD + R    +I+ + ++ GF++   K +  + E  ++ YS+   + FF 
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594

Query: 241 GLV 249
            LV
Sbjct: 595 TLV 597



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 396 NIIHGSDSVESAKKEIGLWFTD 461
           N +HG DS ESA +E+  +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 252  VMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESA 431
            ++  G + PM  E LN V    ++L   +  +  P T    L  ++G    H   +  + 
Sbjct: 2585 IVLDGDIDPMWIESLNTVMDDNKVLTLASN-ERVPLTPSMRLLFEIG----HLKTATPAT 2639

Query: 432  KKEIGLWFTDKEVVGWTPANENWV 503
                G+ F +   VGW P   +W+
Sbjct: 2640 VSRAGILFLNFADVGWNPYVSSWI 2663


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 111 TTLYTIRLNHNKST---LTLFRHHEILLTCSINYTCTTA 4
           TT YT+  ++  +T    T    H    TC+ +YTCTT+
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,206
Number of Sequences: 59808
Number of extensions: 380946
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)