Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120544.Seq
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   123   1e-28
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    56   3e-08
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
 Frame = +3

Query: 231 FLPWSSKVMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHG 410
           F P   + MSSGPVV MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI HG
Sbjct: 60  FFPSLIEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHG 119

Query: 411 SDSVESAKKEIGLWFTDKEVVGW-TPANENWVYD 509
           SD+V+SA +EI  WF  +E+  + +P   +WVY+
Sbjct: 120 SDAVDSANREIAHWFKQEEINDYASPFINSWVYE 153



 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 37/62 (59%), Positives = 47/62 (75%)
 Frame = +1

Query: 67  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 246
           ERTFI +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 247 VK 252
           ++
Sbjct: 65  IE 66


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/77 (42%), Positives = 42/77 (54%)
 Frame = +3

Query: 231 FLPWSSKVMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHG 410
           F P     MSSGPVV M+WEG +VVK  R +LG       +  +I  DL ++      H 
Sbjct: 35  FFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGCHC 93

Query: 411 SDSVESAKKEIGLWFTD 461
           SDSV SA +E  LWF +
Sbjct: 94  SDSVASANREYVLWFEE 110


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114 CGHHY*TFRKERLQTSRFEIRMAIRRTSP-ATLQRFGIPAFLPWSSKVMSSGP 269
           CGH        R +T +FE R+ ++R+SP AT +          SS  M+S P
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSPCATYELCDESCDCEQSSSSMASSP 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,718
Number of Sequences: 27780
Number of extensions: 284160
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)