Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120544.Seq
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 123 1e-28
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 118 3e-27
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 118 3e-27
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 112 2e-25
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 55 4e-08
At3g47450.2 68416.m05160 expressed protein 31 0.78
At3g47450.1 68416.m05159 expressed protein 31 0.78
At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)... 30 1.4
At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family pr... 29 3.2
At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family pr... 29 3.2
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 4.2
At3g61390.2 68416.m06872 U-box domain-containing protein several... 28 5.5
At3g61390.1 68416.m06871 U-box domain-containing protein several... 28 5.5
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 5.5
At1g60790.1 68414.m06843 expressed protein 27 7.3
At2g45920.1 68415.m05710 U-box domain-containing protein contain... 27 9.6
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 123 bits (296), Expect = 1e-28
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +3
Query: 261 SGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKE 440
SGPVV M+WEG NVV TGR+++GATNPA S+PGTIRGD I +GRN+IHGSDSVESA+KE
Sbjct: 87 SGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKE 146
Query: 441 IGLWFTDKEVVGWTPANENWVYD 509
I LWF D V W + WVY+
Sbjct: 147 IALWFPDGP-VNWQSSVHPWVYE 168
Score = 84.2 bits (199), Expect = 6e-17
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 67 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 246
E+TFIM+KPDGVQRGL+G +I RFEKKGF L GLK + ++HY DL+S+ FF GL
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 81
Query: 247 VK**VQD--LWSLWYGRALML 303
V V + +W G+ ++L
Sbjct: 82 VDYIVSGPVVAMIWEGKNVVL 102
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 118 bits (284), Expect = 3e-27
Identities = 51/84 (60%), Positives = 65/84 (77%)
Frame = +3
Query: 255 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAK 434
+SSGPVV MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNIIHGSD E+AK
Sbjct: 151 LSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAK 210
Query: 435 KEIGLWFTDKEVVGWTPANENWVY 506
EI LWF +E+V +T E W+Y
Sbjct: 211 DEISLWFKPEELVSYTSNAEKWIY 234
Score = 90.6 bits (215), Expect = 7e-19
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +1
Query: 52 MAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRP 231
+A + ERTFI +KPDGVQRGL+ II RFE+KG+KLVG+K + PS+ Q+HY DL RP
Sbjct: 83 LAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERP 142
Query: 232 FFPGL 246
FF GL
Sbjct: 143 FFNGL 147
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 118 bits (284), Expect = 3e-27
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +3
Query: 255 MSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAK 434
+SSGPV+ MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGRNIIHGSD E+AK
Sbjct: 152 LSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAK 211
Query: 435 KEIGLWFTDKEVVGWTPANENWVY 506
EI LWF +E+V +T +E W+Y
Sbjct: 212 DEISLWFKPQELVSYTSNSEKWLY 235
Score = 95.1 bits (226), Expect = 3e-20
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +1
Query: 49 MMAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASR 228
++A + ERTFI +KPDGVQRGL+ II RFE+KGFKLVG+K + PS++ Q+HY DL R
Sbjct: 83 VLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKER 142
Query: 229 PFFPGL 246
PFF GL
Sbjct: 143 PFFNGL 148
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 112 bits (269), Expect = 2e-25
Identities = 47/92 (51%), Positives = 66/92 (71%)
Frame = +3
Query: 228 AFLPWSSKVMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 407
+F P + ++SGPVV M WEG+ VV + R+++G T+P ++PGTIRGDL +Q GRNI+H
Sbjct: 138 SFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVH 197
Query: 408 GSDSVESAKKEIGLWFTDKEVVGWTPANENWV 503
GSDS E+ K+EIGLWF + E+ W A W+
Sbjct: 198 GSDSPENGKREIGLWFKEGELCKWDSALATWL 229
Score = 91.9 bits (218), Expect = 3e-19
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +1
Query: 58 EQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFF 237
E E T+IMVKPDG+QRGLVG II RFEKKGFKL+GLK +EL ++HY DL+++ FF
Sbjct: 81 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFF 140
Query: 238 PGLVK 252
P L++
Sbjct: 141 PNLIE 145
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 54.8 bits (126), Expect = 4e-08
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = +3
Query: 186 RRTSPATLQRFGIPAFLPWSSKVMSSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SQP 356
+ T+ A + +F P M+SGPV+ MV E N V R ++G T+ S P
Sbjct: 73 KETASAFYEEHSSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHP 132
Query: 357 GTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFTD 461
+IR +N +HGSDS SA++EI +F D
Sbjct: 133 HSIRALCGKNSQKNCVHGSDSTSSAEREIKFFFKD 167
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +1
Query: 55 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 234
A ERT M+KPDGV I + GF +V +E Y + +SR F
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88
Query: 235 FPGLV 249
FP LV
Sbjct: 89 FPHLV 93
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 451 QRPISFLADSTLSEPWMMLRPT*MQRS--PRIVPGCESAGLVAPSI*RPVFTTLRPSHTI 278
+RP S +A S L W+ + P R PR + E + S+ +PV LRP+ I
Sbjct: 478 KRPASDVAISGLG--WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPI 535
Query: 277 GTTGPE 260
GT+G E
Sbjct: 536 GTSGTE 541
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -2
Query: 451 QRPISFLADSTLSEPWMMLRPT*MQRS--PRIVPGCESAGLVAPSI*RPVFTTLRPSHTI 278
+RP S +A S L W+ + P R PR + E + S+ +PV LRP+ I
Sbjct: 478 KRPASDVAISGLG--WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPI 535
Query: 277 GTTGPE 260
GT+G E
Sbjct: 536 GTSGTE 541
>At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 386
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 422 NAVRTMDDVTPNLNAEITADSAGLRVS 342
NA+R DDV+P +N A +GLRVS
Sbjct: 79 NALRQADDVSPEINTTKLAFVSGLRVS 105
>At2g34040.2 68415.m04168 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 442
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 496 FSFAGVQPTTSLSVNQRPISFLADSTLSEPWMMLRP 389
F+ AGV PTT + ++ ++F+ D + +L+P
Sbjct: 146 FTHAGVTPTTDDQIREKVLNFIRDKVIPLKGELLKP 181
>At2g34040.1 68415.m04167 apoptosis inhibitory 5 (API5) family
protein contains Pfam domain PF05918 Apoptosis
inhibitory protein 5 (API5)
Length = 553
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 496 FSFAGVQPTTSLSVNQRPISFLADSTLSEPWMMLRP 389
F+ AGV PTT + ++ ++F+ D + +L+P
Sbjct: 146 FTHAGVTPTTDDQIREKVLNFIRDKVIPLKGELLKP 181
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 115 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 204
V +I EKKG K +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 123 GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSINYTC 13
GA Y++R+ KS ++ H E TC I +TC
Sbjct: 139 GAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTC 175
>At3g61390.1 68416.m06871 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 373
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 123 GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSINYTC 13
GA Y++R+ KS ++ H E TC I +TC
Sbjct: 139 GAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTC 175
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 180 PYEFQTD*FEAFLFETFNN-GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 25
P F + ++ +F +F+ KT L IRL N++ +T+F +I+ + +I
Sbjct: 4 PSSFSSQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATI 56
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 147 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILL 37
F+ E+ G + TTL T+RL+ T +++R +IL+
Sbjct: 324 FVRESSFKGVNGTTLETLRLDMMDKTTSMYRDADILI 360
>At2g45920.1 68415.m05710 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 400
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 123 GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSINYTC 13
GA T Y++R+ ST ++ E TC I +TC
Sbjct: 106 GAASDTRYSMRMADLLSTKAIYIRQEAPATCCIWFTC 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,003
Number of Sequences: 28952
Number of extensions: 262614
Number of successful extensions: 659
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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