Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120543.Seq
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   3.5  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    26   6.1  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   8.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.1  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 355 GIVVPSSSGLTNPSNITCFSLNLLTIVTLSL 263
           GI  PS SG T+ + +   +LNL  +V LSL
Sbjct: 25  GIAGPSGSGKTSVAQLIVKALNLPHVVILSL 55


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 424 IQLKTNRQC*KYLLTRLMCITNGICLK 504
           I+ +TN Q   YL+ +     +GICLK
Sbjct: 29  IKYRTNEQSQNYLIAKAFESASGICLK 55


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 438 GFQLNLPCPSLYDRRQQRR 382
           GFQLNL   +LY+RR +++
Sbjct: 561 GFQLNLSKATLYNRRHRQK 579


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 511 NKPLSIFHLLYTLASLINTFNIVCWFSIEFTMSFTLRSATAASTEYNGPMT 359
           +K +S F L YT+  +    NI   F      SFT+ S  A     +GP T
Sbjct: 33  DKFISQFRLNYTIIPIAQKSNISLPFLTLSPCSFTICSLRARLHSLHGPST 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,478
Number of Sequences: 5004
Number of extensions: 48431
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)