Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120543.Seq
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               30   1.6  
SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   8.6  

>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 52   KMNLKVILTLINLKGEEEPNCVERITIMPCSLMDTEICLNVRCRSPFAKFKVLII----V 219
            K+N  +I ++  +  EEE + + +  ++ C L+ T+I L     SP   F    +    V
Sbjct: 1302 KINASIIQSVFEMMSEEELSFLRKGKLVSCKLLATDIPL---ASSPIVLFSTTAMFISHV 1358

Query: 220  DGFDSAYIQ 246
            D FDS+ I+
Sbjct: 1359 DSFDSSLIK 1367


>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 369  PLYSVDAAVADRKVKDMVNSIENQQTMLKVFINEANVY 482
            P+ ++ A +++R  KD+VN+   +  +L   IN  N+Y
Sbjct: 952  PIMALTATLSERHRKDLVNNFLRRPVVLSSSINRPNIY 989


>SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 369 PLYSVDAAVADRKVKDMVNSIENQQTMLKVFINEANVY 482
           P+ ++ A +++R  KD+VN+   +  +L   IN  N+Y
Sbjct: 363 PIMALTATLSERHRKDLVNNFLRKPVVLSSSINRPNIY 400


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 404 TIGDSSVD-RI*WSDDVRHCCTFIVRPYKPVKHYMFFVKFVNNCYT 270
           T GD  VD +  W D+ R    FI     P++H+++ V + +N  T
Sbjct: 443 TEGDWEVDTKTIWVDEERRLIYFIGTKDTPLEHHLYVVSYDDNSTT 488


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 505 PLSIFHLLYTLASLINTFNIVCWFSIEFTMSFTLRSATA 389
           P S+FH+ Y + S+I   NIV    I F  S  LR++T+
Sbjct: 227 PRSLFHIQYGIGSIILVLNIVIVILIIFCPS--LRNSTS 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,700,190
Number of Sequences: 59808
Number of extensions: 327429
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)