Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120543.Seq
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical
           protein Y50E8A.11 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 421 TMSFTLRSATAASTEYNGPMT*GIVVPSSSGLTNPSNITCFSLNLLTIVTLSLML 257
           T   T  + T   +E   P T  I+  ++   +NPSNI  +S+ +L IVTL +++
Sbjct: 118 TTEITTTTTTVLISEV--PSTTPIIKVAAFQQSNPSNIVLYSVLILVIVTLLILV 170


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 124 ITIMPCSLMDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATF 255
           ++++  S   + ICL   C S   +  ++I+VD   +AY Q TF
Sbjct: 9   VSLLVASTSASHICLQTACSSFNVESDIVIVVDA-SNAYDQVTF 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,761
Number of Sequences: 27780
Number of extensions: 259651
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)