Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120540.Seq
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/74 (21%), Positives = 29/74 (39%)
 Frame = -3

Query: 280 QKYRKNVF*LCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNES 101
           Q+  +  F    L +L   F+K  + +         K+    S +++W K    K   + 
Sbjct: 127 QRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAKCRQQL 186

Query: 100 ISSRNNCASKHTFS 59
              +N  AS+ T S
Sbjct: 187 QQQQNKSASRTTTS 200


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 342 YVCKYCIMVLNWGTCLMNSSRKNIEKMFFNCVCC 241
           ++CKYC         L+   R + ++  ++C  C
Sbjct: 80  FICKYCNRQFTKSYNLLIHERTHTDERPYSCDIC 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,513
Number of Sequences: 336
Number of extensions: 4530
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)