Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120540.Seq
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28) 29 5.0
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 6.6
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 28 6.6
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015) 28 8.8
SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019) 28 8.8
>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 549 IGPKQHVQHERHANMGLKKMSQPFCKPSSRVLSEDAKYLHLHSKH*IL 406
+GP Q + K +S+ F S +A ++HLH+ H +L
Sbjct: 74 VGPTQRAAAKEATEPSAKTISKAFSMEMSNSFPFEASFIHLHNLHVVL 121
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 258 KTFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 437
K + Y CAT+ + K P GP KHI +R P + A T S A++D
Sbjct: 4800 KCYDDYLCATTHT-KLPGFGPQVIRIKHIVRPKRPPKPQIDTIFNAIEPTGPTKSCAHSD 4858
Query: 438 TWR 446
++
Sbjct: 4859 IFK 4861
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 208 KVVLRIKPTTQTTYTIKKHFFDIFARRVHQTSAPI*DHYAILANILQSDAGTRRGRDHVS 387
K+++R + YT K F R HQ + Y + I +SD G RGR VS
Sbjct: 106 KLIIRKASSVIERYTCIK-----FEERKHQRDYV--EFYMDKSGICESDIGRIRGRQTVS 158
Query: 388 VVQ-ARKQNSMFRVQMQILGVLAEHPR 465
+ Q R + M LG EH R
Sbjct: 159 LGQGCRNPGHVTHELMHTLGFYHEHTR 185
>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
Length = 647
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 297 NKCPNLGPLCNTCKHITIRR 356
NK PNLG LC TC+ +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 699 LLFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 601
L+F ++HV C Q+ ANQVIE +H+
Sbjct: 379 LVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 260 NIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 439
+IFS +EF++ P R + L + P D+D + S + + +CK +
Sbjct: 746 HIFSPSASEEFVRAQPNNREPLLGLGSIQLTVPEADLDSLYSWSLEHGMEFSASKCKVVH 805
Query: 440 LASSLST 460
++ ST
Sbjct: 806 MSKKRST 812
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 699 LLFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 601
L+F ++HV C Q+ ANQVIE +H+
Sbjct: 379 LVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411
>SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 667 TCRVLCTKNTLCRKSSYRK 611
TC LCT+NT CR ++ K
Sbjct: 54 TCAHLCTRNTECRSINFEK 72
>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
Length = 504
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 667 TCRVLCTKNTLCRKSSYRK 611
TC LCT+NT CR ++ K
Sbjct: 40 TCAHLCTRNTECRSINFEK 58
>SB_21258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 148 IKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLKLYCNL 17
IKLWLK N +NE +S + + A + +K + +K +L
Sbjct: 361 IKLWLKLSNNNGNNEKLSRKASAAISNYENKNFWHRKIKQILHL 404
>SB_16965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 264 FFRYFCATSSSNKCP 308
FFRY+C+ S S CP
Sbjct: 36 FFRYYCSISQSEHCP 50
>SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)
Length = 589
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 645 FVHKTRHVRAICQRMQKAT 701
FVH T HVRA+ QR +AT
Sbjct: 543 FVHDTFHVRALSQRRLRAT 561
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,321,396
Number of Sequences: 59808
Number of extensions: 544316
Number of successful extensions: 1565
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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