Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120540.Seq
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04800.1 68416.m00518 mitochondrial import inner membrane tra...    31   1.0  
At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein...    30   1.8  
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c...    29   4.1  
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    29   4.1  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   5.4  
At2g26560.1 68415.m03186 patatin, putative similar to patatin-li...    27   9.5  

>At3g04800.1 68416.m00518 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 188

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 24  QYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVS 203
           Q   ++  Y+ ++ V    + L +   S  FLF +   +  +  G+ LTFFT +  C  S
Sbjct: 12  QQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGS 71

Query: 204 IKSSFE 221
           +  +F+
Sbjct: 72  VLGAFK 77


>At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein /
           molybdenum cofactor biosynthesis enzyme CNX3 (CNX3)
           identical to molybdopterin biosynthesis CNX3 protein
           SP|Q39056 from [Arabidopsis thaliana]
          Length = 270

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 254 LKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECK 430
           +K  FS  + DEF  Q+     + Q +Q+ +   P+PD    M  S   ++KI+    K
Sbjct: 21  IKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSK 79


>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
           contains Pfam domain PF02891: MIZ zinc finger
          Length = 703

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 309 NLGPLCNTCKHITIRRRHPTW-TRSCVSRASPQTKFNVSSANADTWRPR 452
           N G    T  H +  R+HP+  T   VSR S     +++  +   WRPR
Sbjct: 572 NYGVRGLTSSHASTSRQHPSGPTVQSVSRLSDLVDVDLTVPDTSNWRPR 620


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 105 SLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 236
           S CF F +Y +   +   KG+TF +  N  I S + SF    NN
Sbjct: 25  SFCFRFLRYSSSISLGSCKGVTFSSR-NDQIASRRFSFSRDCNN 67


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 211 LFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSRNNCASKHTFSKRSYVLNLK 32
           + +  +H+L + +KV P    I   ++Y + K H   +      A +H     + V  LK
Sbjct: 497 VILHALHILKT-EKVMPTEPNISDCIQYGDPKHHGTDVKKALESALEHHMIMMTNVGKLK 555

Query: 31  LY 26
           LY
Sbjct: 556 LY 557


>At2g26560.1 68415.m03186 patatin, putative similar to patatin-like
           latex allergen [Hevea brasiliensis][PMID:10589016];
           contains patatin domain PF01734
          Length = 407

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 178 QNLTNVLFP*KVVLRIKPTTQTTYTIKKH 264
           Q LTNV+ P   +  ++PT  ++Y +K H
Sbjct: 145 QTLTNVVIPTFDIKHLQPTIFSSYEVKNH 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,938
Number of Sequences: 28952
Number of extensions: 351650
Number of successful extensions: 1104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)