Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120539X.Seq
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 319 ILYPPCHQPTLPMMSPPLSHRGIAASFT 236
           I++P  H P++  ++PP+S  G   SFT
Sbjct: 30  IVFPSGHAPSMKCVNPPVSQNGTLKSFT 57


>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
           protein T24C4.6a protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 540 SKIKVLVFNILQHHNVDSWQNKFSIY 463
           S++ VL+ ++LQHHN D+   +  ++
Sbjct: 553 SRLAVLLVSVLQHHNADNLTQRIVVF 578


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
           protein T24C4.6b protein.
          Length = 895

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 540 SKIKVLVFNILQHHNVDSWQNKFSIY 463
           S++ VL+ ++LQHHN D+   +  ++
Sbjct: 553 SRLAVLLVSVLQHHNADNLTQRIVVF 578


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 567 VTKKV*RKLSKIKVLVFNILQHHNVDSWQNKFSIYSRLPNAS 442
           +TKK+  +L+K+K+ +   L     DS  N+ ++ + LP+ S
Sbjct: 480 ITKKLKLELAKLKLRITQSLSDSKDDSLSNEANLQNDLPSTS 521


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 567 VTKKV*RKLSKIKVLVFNILQHHNVDSWQNKFSIYSRLPNAS 442
           +TKK+  +L+K+K+ +   L     DS  N+ ++ + LP+ S
Sbjct: 480 ITKKLKLELAKLKLRITQSLSDSKDDSLSNEANLQNDLPSTS 521


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 567 VTKKV*RKLSKIKVLVFNILQHHNVDSWQNKFSIYSRLPNAS 442
           +TKK+  +L+K+K+ +   L     DS  N+ ++ + LP+ S
Sbjct: 480 ITKKLKLELAKLKLRITQSLSDSKDDSLSNEANLQNDLPSTS 521


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 567 VTKKV*RKLSKIKVLVFNILQHHNVDSWQNKFSIYSRLPNAS 442
           +TKK+  +L+K+K+ +   L     DS  N+ ++ + LP+ S
Sbjct: 480 ITKKLKLELAKLKLRITQSLSDSKDDSLSNEANLQNDLPSTS 521


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 219 KHLPEESSGNKITALC---KKYPEDMMTKVKGYN 127
           +H P    GN ITALC   K  PE   +K+ GYN
Sbjct: 386 RHGPPSRLGNGITALCSIDKDCPEGTCSKI-GYN 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,206
Number of Sequences: 27780
Number of extensions: 252525
Number of successful extensions: 713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)