Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120539X.Seq
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = -2

Query: 317 PLSPLPSTNTADDVAASESSRNCGFFYFTVYILSTCLKNHREIKSQLCARNTLK 156
           PL+  PS  +A      +         FT+Y  +   K  RE  S    R   K
Sbjct: 566 PLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERKATK 619


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 86  MDSKCI-EEYKSYAKRKREKEKSE 18
           M  +C+  EY+   KRK EK + E
Sbjct: 252 MRPECVVPEYQCAVKRKEEKAQKE 275


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 430 PPWSTSVWQPAIDTK 474
           P W T VW+   D K
Sbjct: 420 PAWKTHVWKKGRDKK 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,996
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)