Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120539X.Seq
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31814.1 68414.m03906 expressed protein                             29   3.1  
At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOA...    27   9.6  
At3g15300.1 68416.m01932 VQ motif-containing protein contains PF...    27   9.6  

>At1g31814.1 68414.m03906 expressed protein
          Length = 473

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = -2

Query: 230 VYILSTCLKNHREIKSQLCARN--TLKI**QKL-KGITIVHLIF*AT*KGNMDSKCIEEY 60
           V IL T LKN RE   ++CA    +LK+  +   K ++ +  +     + N++S+ +EE 
Sbjct: 282 VSILKTSLKNSREAAKRVCAEGNYSLKVQNEATDKELSALRAVIKVVKEKNIESEFMEEK 341

Query: 59  KSYAKRKREKEKSE 18
                ++ E +K++
Sbjct: 342 LEECVKELEDQKAQ 355


>At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219 similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 345

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 311 IKDHIYSILNLSSCYYGATYIGS 379
           IK  +Y+I+++S CYY +T I S
Sbjct: 9   IKVWVYAIISISYCYYTSTRIKS 31


>At3g15300.1 68416.m01932 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 219

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 149 IISSGYFLHRAVILFPDDSSGRCLKYIP 232
           I   GY+LHR+ I  P DS  + L   P
Sbjct: 182 IADKGYYLHRSPISTPRDSEPQLLPLFP 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,877
Number of Sequences: 28952
Number of extensions: 230011
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)