Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DBF0D8 Cluster: UPI0000DBF0D8 related cluster; n...    36   0.65 
UniRef50_Q6F130 Cluster: Putative uncharacterized protein; n=1; ...    34   3.5  
UniRef50_Q05FH3 Cluster: Putative cytochrome O ubiquinol oxidase...    34   3.5  
UniRef50_UPI000023EDEE Cluster: hypothetical protein FG08565.1; ...    33   8.0  
UniRef50_Q2SHZ1 Cluster: Non-ribosomal peptide synthetase module...    33   8.0  
UniRef50_Q9NF93 Cluster: Hypothetical transmembrane protein L803...    33   8.0  

>UniRef50_UPI0000DBF0D8 Cluster: UPI0000DBF0D8 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBF0D8 UniRef100 entry -
           Rattus norvegicus
          Length = 287

 Score = 36.3 bits (80), Expect = 0.65
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 606 FKYVCNVMPTYDRQQFGTHTYTHLQTREHNHCLMNC 499
           + Y C  + TY      THT+TH  T  H  C+  C
Sbjct: 2   YMYKCMCLDTYSHLNMHTHTHTHTHTHTHTKCVHAC 37


>UniRef50_Q6F130 Cluster: Putative uncharacterized protein; n=1;
           Mesoplasma florum|Rep: Putative uncharacterized protein
           - Mesoplasma florum (Acholeplasma florum)
          Length = 232

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 135 LKINIKFLFYFSALLNFLIYYLKYVYTA-NNLKIYNLLLGS*LEVFFNFKIHIVHR*FYL 311
           L  N  FL  F  LL +LI Y+  +    NN+K Y +++     + F FK+H ++    L
Sbjct: 38  LSFNFVFLLIFILLLTWLISYILLIKRIKNNIKTYVVVILICSILLFIFKVHYLYEAIEL 97

Query: 312 FSVF 323
           F+ +
Sbjct: 98  FNKY 101


>UniRef50_Q05FH3 Cluster: Putative cytochrome O ubiquinol oxidase
           subunit IV; n=1; Candidatus Carsonella ruddii PV|Rep:
           Putative cytochrome O ubiquinol oxidase subunit IV -
           Carsonella ruddii (strain PV)
          Length = 93

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 141 INIKFLF-YFSALLNFLIYYLKYVYTANNLKIYNLLLGS*LEVFFNFKIHIVHR*FYLFS 317
           IN K +F YFS L N    YL Y++    L + N ++    ++FF FK +   + F++ S
Sbjct: 14  INEKKIFLYFSFLTN----YLIYIFYNAKLVLINFIIQVFFQLFFFFKFNRFKKKFFILS 69

Query: 318 VF 323
           +F
Sbjct: 70  IF 71


>UniRef50_UPI000023EDEE Cluster: hypothetical protein FG08565.1; n=1;
            Gibberella zeae PH-1|Rep: hypothetical protein FG08565.1
            - Gibberella zeae PH-1
          Length = 1606

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 352  LSVSLTCHVKRNITPIADNSGGVNPARRRYCYIAGSE 462
            +S+ L  H  RN TP   NSG +    +R  Y A SE
Sbjct: 1073 ISMPLNLHRPRNFTPTKPNSGSIKDGDKREAYAAESE 1109


>UniRef50_Q2SHZ1 Cluster: Non-ribosomal peptide synthetase modules
           and related protein; n=1; Hahella chejuensis KCTC
           2396|Rep: Non-ribosomal peptide synthetase modules and
           related protein - Hahella chejuensis (strain KCTC 2396)
          Length = 1630

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 580 DIRSATVWNTHIHASPNTRTQSLFNELFGRQLV-MYRELASRCPQCNSTAASRG 422
           D+R    +N H H++P+   + +   + G  +V  +R+ A+R PQ N+  A  G
Sbjct: 537 DLRQLRAFNAHWHSAPSAVARPVEELILGDDIVSCFRQQAARRPQQNAVIADDG 590


>UniRef50_Q9NF93 Cluster: Hypothetical transmembrane protein
           L8032.05a; n=1; Leishmania major|Rep: Hypothetical
           transmembrane protein L8032.05a - Leishmania major
          Length = 208

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 606 FKYVCNVMPTYDRQQFGTHTYTHLQTREHNHCLMNCLEDSW*CIA 472
           F ++C+ + TY      THT+TH  T+    C+++C+   W  +A
Sbjct: 122 FPFLCSFLFTYICSSL-THTHTHTHTQSVCVCVVSCVRVQWVSLA 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,208,014
Number of Sequences: 1657284
Number of extensions: 12249105
Number of successful extensions: 33659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33134
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)