Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   7.3  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.3  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    25   9.7  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 591 NVMPTYDRQQFGTHTYTHLQTR 526
           N +PT D+Q  GT + TH Q +
Sbjct: 415 NKLPTIDKQILGTSSLTHFQDK 436


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 135 LKINIKFLFYFSALLNFLIYYLKYVYTANNLKIYNLLL 248
           +K+NI+  FY +A L  L+ +L+Y+   N+ K   L L
Sbjct: 440 IKLNIR-TFYLTAFLCALLNFLRYLKYRNSKKDTELSL 476


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 583 ADIRSATVWNTHIHASPNTRTQSLFNELF 497
           +D  S  VWN+ +H S     +  F+E+F
Sbjct: 455 SDDGSVRVWNSSLHGSAANLREKNFSEIF 483


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 586 NADIRSATVWNTHIHASPNTRTQSLFNELFGRQLVMYRELASRCPQCNSTAAS 428
           N D+ SA VW   I   P T   S   E +   L++Y     +  Q +S  +S
Sbjct: 128 NNDLDSAKVWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGKKFQLDSATSS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,412
Number of Sequences: 5004
Number of extensions: 53839
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)