Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0591 - 4401847-4402063,4402860-4403002,4403339-4403447,440...    28   7.6  

>01_01_0591 -
           4401847-4402063,4402860-4403002,4403339-4403447,
           4403546-4404707,4405754-4405865,4405980-4406015
          Length = 592

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +2

Query: 392 RPSRTTAGA------LTPRGGGTVTLRAARGKFAIHYQLSSKQFIKQ*LCSRVWRCVYVC 553
           RPSR  A A      L       + L AAR + + + ++ SKQ +   L   V R +  C
Sbjct: 299 RPSRAAAAADQSNDDLAMIADLVMDLAAARKRRSPYVRIVSKQMVGVFLTVWVRRGLRRC 358

Query: 554 VPNCCRSYVGITLHTYLNNK 613
           V N   S VG+    Y+ NK
Sbjct: 359 VHNVGVSTVGVGAMGYIGNK 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,153
Number of Sequences: 37544
Number of extensions: 321977
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)