Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                33   0.16 
SB_10365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08)                  28   7.7  

>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +3

Query: 399  RGQQRGR*PREAAVLLHCGQREASSRYITSCLPNNSLNNDCVLVFGDACMCVFQTVADRM 578
            +GQQRGR  +     LH GQR+ S++      P  SL             C  Q  +D  
Sbjct: 1793 QGQQRGRQRQHQGQQLHQGQRQQSTQQQQKQQPRQSLQKKVKTFVPSYEKCPSQVTSDEW 1852

Query: 579  SALHYIR 599
               HY R
Sbjct: 1853 PCEHYKR 1859


>SB_10365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 STSRKDGLKINIKFLFYFSALLNFLIYYLKYVYTANNLKIYN 239
           S++R++GL I  +   +     +F  Y   Y Y    L++Y+
Sbjct: 3   SSARQNGLSIGYRLRMFVQPRTHFRSYASSYTYAVTPLRVYS 44


>SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08)
          Length = 377

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 135 LKINIKFLFYFSALLNFLIYYLKYVYTANNLKIYNLLLGS*LEVFFNFKIHIVHR*FYLF 314
           L++ I  + Y   ++NF   Y+   +TA+ L +  + L     VFF FK  +     Y+ 
Sbjct: 60  LQVGISGILYHLDIVNFFWPYV--TFTASLLSLTGVALERAYAVFFPFKHRVSRTRTYII 117

Query: 315 SVF 323
            +F
Sbjct: 118 CIF 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,400,903
Number of Sequences: 59808
Number of extensions: 398224
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)