Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    27   0.69 
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          24   3.7  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   4.9  

>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 467 CLSLPAM*QYRRLAGLTPPLLSAMGVIFRFTWQVNETLSDYLFSTL 330
           C +L +  +  RL  +   +L+ +GVIF+F W++   +S  +  T+
Sbjct: 326 CWALASFSKNVRLQNVHRLVLTWLGVIFQFLWRLGTVISRVISLTV 371


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 98  EPTFWCYCRYLSRKLNI 48
           EPTFWC   Y    L +
Sbjct: 309 EPTFWCSISYYELNLRV 325


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 92  TFWC-YCRYLSRKLNIVVAHAK 30
           T+ C YC Y S KL ++  H K
Sbjct: 126 TYMCNYCNYTSNKLFLLSRHLK 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,331
Number of Sequences: 2352
Number of extensions: 13900
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)