Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    28   5.1  
AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    28   6.8  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   8.9  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical
           protein F57G9.4 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 421 NPARRRYCYIAGSERQVRDTLPAVFQTIH*TMIVFSCLEM----RVCVCSKLLPIVCRHY 588
           NP RRR+ +    + QV++ L A++       +V SC+ +       +   L+P  C H+
Sbjct: 223 NPRRRRH-FSVSQQFQVKENLRALYLGTRLVFVVLSCIALCGIGITALFYDLIPPFCCHF 281

Query: 589 I 591
           +
Sbjct: 282 V 282


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
            R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 477  IANLPLAARNVTVPPPRGVNAPAVVRDGRDIS 382
            + +L  A R V +PPPRG  A  +  + R  S
Sbjct: 1409 VGDLSTAPRTVAMPPPRGTTATPMTLEPRGFS 1440


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 594 CNV-MPTYDRQ-QFGTHTYTHLQTREHNHC-LMNC 499
           CN+   T  R+ +   H YTHL+ R H  C ++NC
Sbjct: 240 CNICQQTLHRENRLQEHLYTHLKERSHFDCPMLNC 274


>AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.4 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 645 RFYKSYNDLIYLLFKYVCNVMPT 577
           R  KSYN L  L F +  N++PT
Sbjct: 299 RLQKSYNSLSLLFFNFFKNILPT 321


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 189 IYYLKYVYTANNLKIYNLLLGS*LEVFFNFKIHIVHR*FYLFSVF 323
           IYY+ ++YT     IY++       ++  + IHI++  + +F VF
Sbjct: 43  IYYIYHIYTYTKSPIYHI-----HHIYQIYHIHIINTLYIIFGVF 82


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 50  YSICEINIDNSTKRLALRLSKINFSKGWIKNKH*IFILFQRLIKFFNLLFEI 205
           Y+I   ++      +A   + +NF K  + + H IF +F   I FF L+F I
Sbjct: 249 YTIAVYDVALFVIAIATARALVNFDKA-VLHIHYIFCIFSFFINFFFLIFSI 299


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 307 IYLVFLDISVEKR*SLSVSLT----CHVKRNITPIADNSGG 417
           I L + D+S+EK    S+S T    CH K    P+ D + G
Sbjct: 432 INLGYEDLSIEKMHDFSISSTCNADCHCKMEWNPVCDRNTG 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,022
Number of Sequences: 27780
Number of extensions: 302789
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)