Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   7.9  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 80 YCRYLSRKLNIVVAHA 33
          Y RYL+R+  I +AHA
Sbjct: 29 YNRYLTRRRRIEIAHA 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 470  TCLSLPAM*QYRRLAGLTPPLLSAMGVI 387
            TC +L +  Q  R++ ++PPL +A GVI
Sbjct: 1089 TCTTLTS--QTIRISWMSPPLSAANGVI 1114


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 80  YCRYLSRKLNIVVAHA 33
           Y RYL+R+  I +AHA
Sbjct: 291 YNRYLTRRRRIEIAHA 306


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 74 RYLSRKLNIVVAHA 33
          RYL+R+  I +AHA
Sbjct: 31 RYLTRRRRIEIAHA 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,705
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)