Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120538.Seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    29   3.6  
At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    28   4.8  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    27   8.4  
At4g26240.1 68417.m03777 expressed protein                             27   8.4  
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    27   8.4  

>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 397 IADNSGGVNPARRRYCYIAG--SERQVRDTL 483
           I DN GG+NP + R+C   G  ++ ++ DT+
Sbjct: 209 IEDNGGGMNPEKMRHCMSLGYSAKSKLADTI 239


>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 379 KRNITPIADNSGGVNPARRRYCYIAGSERQ 468
           K +I  + DN GG+NP+  R C   G  R+
Sbjct: 151 KSSILIVEDNGGGMNPSTFRECLSLGYSRK 180


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 559 WNTHIHASPNTRTQSLFNELFG 494
           WNTH++  PN+R Q+    + G
Sbjct: 108 WNTHLNKKPNSRRQNAPESIVG 129


>At4g26240.1 68417.m03777 expressed protein
          Length = 198

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 16  EWRAIFACATTIFNLRDK 69
           EW AI AC+ +I  LRDK
Sbjct: 104 EWIAIMACSLSIVGLRDK 121


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 465 PLAARNVTVPPPRGVNAPAV 406
           P+AA N+ VPPP+ V +  V
Sbjct: 11  PVAAENIEVPPPKAVESEEV 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,244
Number of Sequences: 28952
Number of extensions: 262856
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)