Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120537.Seq
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   1.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   8.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.3  

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 590 SRFSVASSHNHFVGKQNERSVASAKSAWPP 501
           S FS + SHNH    Q E+S +++K +  P
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSMLP 566


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 313 LITKSGVIQLIMKSKLPYAIELQEWLL 393
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 198 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 326
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 586 VSASRRATIISLANKMSDRL--LPPNLRGH 503
           V+  RR + ISLAN++S  L   PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 IVNGQYVSTSTASTNRRLSMPTKSSTCS 260
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 116 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 241
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 543 LFANEMIVARRDAETARQDCE 605
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,693
Number of Sequences: 5004
Number of extensions: 64303
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)