Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120537.Seq
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 33 0.17
10_02_0110 - 5371536-5372882 33 0.31
08_01_0642 + 5564535-5564990 31 0.70
06_01_0008 + 141405-142421 31 0.70
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 31 1.2
06_03_0050 + 15980215-15981519 30 1.6
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.8
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.8
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 3.8
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148... 29 3.8
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 28 6.6
09_06_0072 - 20682424-20682870,20683928-20684854 28 6.6
07_01_0245 - 1803170-1803887,1803971-1804641 28 6.6
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166... 28 6.6
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 6.6
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 28 6.6
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 6.6
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 28 8.7
01_06_1510 - 37859664-37861319 28 8.7
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 28 8.7
01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233 28 8.7
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +2
Query: 374 NYKNGFWRRSFLKCYARGKYAPAVEMDTNDVIAKIDDLTQKL----TVATQIWRKQPIAH 541
++ N W S + R A+E+D +++ +DD+ +++ +AT ++ PI
Sbjct: 1298 SFCNALWNLS--QEMVRHNNLAAIEID--EILYTVDDMAERIGEMSALATLMYASTPIQK 1353
Query: 542 FVCQRNDCGSTRR*NGSARLRKRAPETAHWPTAWRTL 652
+C R + L +P +PT W+TL
Sbjct: 1354 SICT-GSVNRNRGVSSQCTLENLSPHLQQFPTLWKTL 1389
>10_02_0110 - 5371536-5372882
Length = 448
Score = 32.7 bits (71), Expect = 0.31
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -3
Query: 335 ITPDLVMSTVCGCKY----SG-SPCFATLSGAGAGFGRHAQTSICTCRRRGHVLPVHNLH 171
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 170 ILNC-WRC 150
+N W C
Sbjct: 379 AMNLRWFC 386
>08_01_0642 + 5564535-5564990
Length = 151
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 561 IVARRDAETARQDCENA----RRKRRTGQPHGGHCARRDSQPSNPQLCHSLAVCD 713
++A+ AET ++ CE++ RR RR+G +G CAR ++ S+ D
Sbjct: 5 LLAQVPAETEKEKCESSRMRRRRLRRSGTGYGASCARAGRGQGGAEVATSILTHD 59
>06_01_0008 + 141405-142421
Length = 338
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 241 PNPAPAPDSVAKQGDPL-YLHPH-TVLITKSGVIQLIMK 351
P+P+P+P A+ DP +LH H T L++ IQ++++
Sbjct: 89 PSPSPSPSPAARHFDPSNFLHDHFTGLLSGGATIQIVLE 127
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 540 ILFANEMIVARRDAETARQDCENARRKRRTGQPHGGHCARRDSQPSNP 683
+LF N++ R DA Q GQPH A RD QP +P
Sbjct: 176 VLFINDLDAGRHDAVHGEQPDGERDADEHRGQPH-QRAAPRDVQPPSP 222
>06_03_0050 + 15980215-15981519
Length = 434
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 644 AMRLASAPFPARVFAILPSRFSVASSHNHFVGKQNERSVASAKSAWPP 501
+M S P +FA LPS S+ S N+F G + AS ++A PP
Sbjct: 265 SMNNFSGSIPRELFA-LPSASSLLLSRNNFTGSLAVPAFASERAATPP 311
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 542 FVCQRNDCGSTRR*NGSARLRKRAP 616
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 333 HARFGNEHCVWVQIQRVALLCHA 265
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 428 KYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 526
++AP+VE +V A I+ +T+K+ + + W+K
Sbjct: 304 RHAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKK 336
>01_06_0569 +
30313337-30313650,30314271-30314353,30314763-30314876,
30315876-30315938,30316289-30316380,30316464-30316544,
30316629-30316727,30316795-30316933,30317017-30317165
Length = 377
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 653 AMSAMRLASAPFPARVFAILPSRFSVASSHNHFVGKQNERSVASAKSAWPPSIFASDRQF 474
A S + S+ F + A+LP RFSV S ++ +++ ++ W S+ A+ R
Sbjct: 76 AASFLSTRSSSFDSPTIALLPLRFSVC-SRTSATAERGAFAMSRLRALWQASVNATRRAI 134
Query: 473 -WQ*HHLYP 450
W L P
Sbjct: 135 VWNSEDLIP 143
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 721 LPTSHTARLWHSCGLLGWLSRLAQCPPCGWPVRRFRRAFSQSCRAVSASRRATII 557
LP H L+HS +L WLS CP C + + + +S +A + R ++
Sbjct: 350 LPCMH---LYHSSCILPWLSSRNTCPVCRYELPTDDAEYERSKQATTNVRDIQVV 401
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQL-IMKSKLPYAIELQEW 387
NPAPAP P L +L+ K+ V Q+ + S L + I L +W
Sbjct: 125 NPAPAPAPTPTPPPPGILESLAMLVIKAVVFQVSALISCLTFPIRLLQW 173
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 257 AGAGFGRHAQTSICTCRRRGHVLP 186
AGAG G H TS C C+ R + LP
Sbjct: 25 AGAGAGVHPSTSPCYCKIRLNKLP 48
>05_06_0152 -
26008495-26009074,26010555-26011361,26016536-26016657,
26016860-26017462
Length = 703
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 612 RRKRRTGQPHGGHCARRDSQPSNPQLCHSLA 704
R KR+ PH G ARR+ P+LC A
Sbjct: 512 RGKRKWEAPHCGAIARREDGEPEPKLCRPAA 542
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 224 TFEHADQIQHLLQIAWQSRATRCICTHTQCSL 319
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -3
Query: 632 ASAPFPARVFAIL--PSRFS--VASSHNHFVGKQNERSVASAKSAW 507
A A V A++ P++FS +A++ N+F+GK E S + S W
Sbjct: 582 APAALAENVGAVMSDPNKFSAAIAAAINNFMGKDGESSSGKSSSKW 627
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 149 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHLLQIAWQSRATRCIC 298
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 244 NPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL 390
+PAPA +A G P+T+L+ SGVI +I S P ELQ +L
Sbjct: 20 SPAPAKIVIADLG--CSSGPNTLLVV-SGVISMISTSGYPEKTELQFFL 65
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 297 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 389
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 291 QRVALLCHAIWSRCWIWSACSNVDLYLP-STWT 196
+RV + W R W+ CS VDL P + WT
Sbjct: 31 ERVGYGMPSFWPRSTKWALCSEVDLIGPLNNWT 63
>01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233
Length = 379
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Frame = -1
Query: 724 LLPTSHTAR-LW----HSCGLLGW-LSRLAQCPP-----------CGWPVRRFRRAFSQS 596
++P SHT LW + C L W + L C P CGWP+R R+ S
Sbjct: 87 IIPCSHTFHELWEICLYRCILHEWDIENLLTCSPKVEKLSLVNSACGWPLRLHIRSHSLR 146
Query: 595 CRAVSASRRATIISLANKMSDRLL 524
C AS + ++ +RL+
Sbjct: 147 CMLHWASSLEELAMVSTPCLERLI 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,469,726
Number of Sequences: 37544
Number of extensions: 497852
Number of successful extensions: 1749
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -