Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120537.Seq
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   2.9  
SB_25246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  28   6.7  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 531 RSLILFANEMIVARRDAETARQDCENARRKRRTGQPHGGHCARR 662
           RS    AN  I ++RD  T++ DC+ +   +RT + + G   +R
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKR 98


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 300 VQIQRVALLCHAIWSRCWIWSACS--NVDLYLPST 202
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_25246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -1

Query: 703 ARLWHSCGLLGWLSRLAQCPPCGWPVRRFRRAFSQSCRAVSASRRATIISLANKMSDRL 527
           A LW S  +L W+S+L QC      +RR       +CR +   R  T+ ++A + +DRL
Sbjct: 111 APLWVSKLILSWVSKLTQC-----LLRRVNNKLKSTCRTLRLGR--TVCNVACR-TDRL 161


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -3

Query: 299 CKYSGSPCFATLSGAG-----AGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 144
           CK +   C     G G     A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 168 CKPNNLRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 661 RLAQCPPCGWPVRRFRRAFSQSCRAVSASRRATIISLANKMSD 533
           RLA+ P     V+ F R F   CR+V   R  TI++   K++D
Sbjct: 436 RLARLPRRNGQVKHFGRVFPHDCRSV---RLGTILTSNRKVTD 475


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 238 RPNPAPAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 360
           RP+  P    ++ +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,104,970
Number of Sequences: 59808
Number of extensions: 544795
Number of successful extensions: 1517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)