Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120537.Seq
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   6.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/32 (21%), Positives = 18/32 (56%)
 Frame = -2

Query: 675 WVGYHVLRNVRHAVGQCAVSGARFRNLAEPFQ 580
           W+ + V+ +    +  CA+S  R+ ++ +P +
Sbjct: 101 WIAFDVMCSTASILNLCAISLDRYIHIKDPLR 132


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 606  NARRKRRTGQPHGGH 650
            N    R+TG  HGGH
Sbjct: 1920 NEAPSRQTGSGHGGH 1934


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 233 HADQIQHLLQIAWQSRATRCICTH 304
           H D   H  QIAW +      C+H
Sbjct: 549 HRDTYIHAQQIAWMALKMIQACSH 572


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 191 IRVHVDGKYKSTFEHADQIQH 253
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 23/76 (30%), Positives = 30/76 (39%)
 Frame = -2

Query: 624 AVSGARFRNLAEPFQRRVEPQSFRWQTK*AIGCFRQICVATVNFCVRSSILAITSFVSIS 445
           AVS   F  L  PF+  V  Q + WQ    I   R     T ++    S+L I +F    
Sbjct: 76  AVSDLLFLILGLPFELSVFWQQYPWQWGLGICKLRAYVSETSSYV---SVLTIVAFSIER 132

Query: 444 TAGAYLPRA*HLRNDL 397
               Y P   H R+ L
Sbjct: 133 YLAIYHPLR-HYRSGL 147


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 212 CRRRGHVLPVHNLHILNCWRCPWPQ 138
           CR + HV  +H+  ++  +R P  Q
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQ 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,457
Number of Sequences: 438
Number of extensions: 4544
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)