Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120535.Seq
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    29   0.46 
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    28   1.4  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   2.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.4  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.4  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   5.6  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.6  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   7.5  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   7.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   9.9  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   9.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   9.9  

>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 144 NVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKYPISTKKLT 281
           N+V  + +   + +M  S   +NT R WD    +G  Y IS  + T
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTISRAEKT 401



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 129 EKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKYPISTKKLTC 284
           E H   V+D + S   D  +  S  Q++TI+TWD +        I+   L C
Sbjct: 266 EGHTGPVMDIVFS--DDPSVAYSVGQDHTIKTWDLITGQNVDSKITKAPLLC 315


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +3

Query: 9   TMNFWATFSICLVGYLVYAGHLNNELQEIKSIL-VVMYESMEKHFSNVVDEIDSL----K 173
           TM FWA FS+ ++   +  G     L+EI+S+L  V    +    + +  ++DSL    K
Sbjct: 345 TMAFWAIFSLPMIQKALPKG----VLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400

Query: 174 TDTFMMLSNLQNNT 215
           TDT    S+   NT
Sbjct: 401 TDTGCCSSSCCKNT 414


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 357 YINLVISSVY*TLSRLLTTPFFVNST 280
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 175 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 38
           + ++S+SS TTL K  S  SY+ T+ + +  +S FK    T  P  +
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -3

Query: 239 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 108
           Y  V R+ R++  V  H         N +YH GK++F        HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +3

Query: 117 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 236
           Y +  +++ +++D  +S   D     S+  NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 248 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 162
           A+  + VPR  RVI QV+Q   R R K+I
Sbjct: 4   AVEKDAVPRKRRVISQVSQACIRCRQKKI 32


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 162 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 254
           D  K+ T +M+S   +NT+R WD  VK GK+
Sbjct: 59  DINKSST-LMVSGAADNTMRLWD--VKTGKQ 86


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 78  NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 227
           N L E K  L+    +  K   NVV  I ++  D+  +  +  NN  IR W
Sbjct: 81  NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = +3

Query: 36  ICLVGY---LVYAGHLNNELQE 92
           +CL+GY   LVYAG+  NE ++
Sbjct: 266 LCLLGYEFFLVYAGYTTNESEK 287


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 443 RHGLH-LSKFKNAFASVSTTFVH 508
           R GL   SKF  AFAS+S+ F+H
Sbjct: 39  RSGLSKFSKFVYAFASISSGFLH 61


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 464 KFKNAFASVSTTFVHIPS--KH--RKMINDAGGSCHNTVKYMVDIYG 592
           K  +    ++T FV   S  KH   KM N+AGG       Y + +YG
Sbjct: 49  KVLDELQQITTEFVKKVSLAKHMNEKMANEAGGKIFTYGSYRLGVYG 95


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -1

Query: 256 YFLPFFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSL 77
           Y L  FT  SH+R V    LL+  ++ ++ ++  +   E        +   IDF     L
Sbjct: 497 YSLRCFTKRSHLRSVYQTTLLSNTDLDLVYDAFINAIGENNICHGDVLEQKIDFNGFERL 556

Query: 76  FKCPA 62
             C A
Sbjct: 557 VDCAA 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,675
Number of Sequences: 5004
Number of extensions: 54200
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)