Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120535.Seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    34   0.098
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   0.92 
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.7  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   6.5  

>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 449 GLHLSKFKNAFASVST-----TFVHIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILR 613
           G+H  KF  AF  +S+     T + I  K+ +M  D    CH+T KY+   YG  +L+  
Sbjct: 822 GIHSEKFAMAFGLISSSGASKTTIRI-LKNLRMCRD----CHDTAKYVSKRYGCDILLED 876

Query: 614 TPC 622
           T C
Sbjct: 877 TRC 879


>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 99  SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 233
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 455  HLSKFKNAFASVSTTFVHIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 607
            H  K   AF  +ST     PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 922  HSEKLAVAFGLLSTP----PSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 193 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPA 62
           N+IN+  L  S  S+ +E   SI +     +D   CSSL + P+
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPS 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,071
Number of Sequences: 28952
Number of extensions: 264552
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)