Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT...   152   6e-36
UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein precur...    70   6e-11
UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1; ...    59   8e-08
UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein precur...    33   5.9  
UniRef50_Q28NY8 Cluster: Binding-protein-dependent transport sys...    33   7.8  

>UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in
           EGT-IAP1 intergenic region precursor; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 79.9 kDa
           protein in EGT-IAP1 intergenic region precursor -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 690

 Score =  152 bits (369), Expect = 6e-36
 Identities = 75/84 (89%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   FSTMEQTCSIGITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQ 180
           FSTM QTCSI IT+DVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ MLLEKATT SFI 
Sbjct: 480 FSTMAQTCSIRITYDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ-MLLEKATT-SFIP 537

Query: 181 TVDNFTRPVLLQLFNKFHIEDYTS 252
           TVDNFTRPVLLQL +KFHI+DYTS
Sbjct: 538 TVDNFTRPVLLQLPHKFHIKDYTS 561



 Score =  103 bits (248), Expect = 3e-21
 Identities = 52/83 (62%), Positives = 54/83 (65%)
 Frame = +3

Query: 261 HSFHQSKIYTNSATPDEDSQDDSNXXXXXXXXXXXXXXXXXXXXXXXXXXIKKRCHQSNN 440
           H FHQSKIYTNSA PDEDSQDDSN                          IKKRCHQSNN
Sbjct: 565 HFFHQSKIYTNSAAPDEDSQDDSNTTVVIIAIVAAMILFCGLLLFLFCC-IKKRCHQSNN 623

Query: 441 VTVQYKNNDEFVTICNNLENNRA 509
           V VQYKNN+EFVTICNNLE+NRA
Sbjct: 624 VVVQYKNNNEFVTICNNLEDNRA 646



 Score = 32.7 bits (71), Expect = 7.8
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 470 ICHNLQ*FRKQSSYINLTNEYDDSDDMP 553
           IC+NL+  R   +YINL NEY DSDDMP
Sbjct: 637 ICNNLEDNR---AYINLPNEY-DSDDMP 660


>UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein
           precursor; n=6; Nucleopolyhedrovirus|Rep:
           Uncharacterized 73.1 kDa protein precursor - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 657

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = +1

Query: 19  TCSIGITHDVTI-TVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNF 195
           TCS+ +  D  + TVD+R + + S  YWP+++FN+N+Y++ ++LL+  TT SF  TV + 
Sbjct: 468 TCSVRVNKDALLFTVDTRSHKAASRAYWPRRRFNYNDYVNTSLLLQ--TTTSFADTVTDL 525

Query: 196 TRPVLLQLFNKFHIEDYTS 252
           +   L  L ++FHI DY +
Sbjct: 526 SAQQLKTLRSRFHIRDYAT 544


>UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1;
           Epiphyas postvittana NPV|Rep: Putative uncharacterized
           protein - Epiphyas postvittana nucleopolyhedrovirus
           (EppoMNPV)
          Length = 649

 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 22  CSIGITHDVTI-TVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFT 198
           CSI I + + +   D++ Y + S TY P+K+F++NNY+D ++L +  T+  F   V + T
Sbjct: 464 CSIRIINTLILFNADTQLYATESITYEPRKQFDYNNYVDGSLLSQ--TSTPFADAVTDLT 521

Query: 199 RPVLLQLFNKFHIEDYTS 252
              L  L ++FHI DYT+
Sbjct: 522 LTKLRLLRSRFHIRDYTA 539


>UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium phytofermentans ISDg|Rep:
           Putative uncharacterized protein precursor - Clostridium
           phytofermentans ISDg
          Length = 483

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 43  DVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTA 168
           D+   +DS FY+  S+T   K  FN N  + +NM ++K T A
Sbjct: 240 DINYLIDS-FYIVDSSTTVTKSLFNVNELLKKNMAIKKRTDA 280


>UniRef50_Q28NY8 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Jannaschia sp.
           CCS1|Rep: Binding-protein-dependent transport systems
           inner membrane component - Jannaschia sp. (strain CCS1)
          Length = 252

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +2

Query: 29  LE*RMM*P*L*IRDFMSAIQLHTGLKRNLILTTTSTKICC--LKKQPPPVLY--RLLTIL 196
           +E R+M P + + D M  +  +TGL   +  T   T I    LK+ PP V+   RL    
Sbjct: 101 IESRIM-PTMLVTDTMGLLNTYTGLILPVTATGLGTLILRQQLKQLPPEVIEAARLDGAG 159

Query: 197 PVLFYCNFLINFTLKITHRLSAFF 268
           P   +C+F++  +L I   L AFF
Sbjct: 160 PWRVFCDFIVPLSLPIIAALLAFF 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,307,724
Number of Sequences: 1657284
Number of extensions: 9427485
Number of successful extensions: 23456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23444
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)