Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.2  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   7.2  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   9.5  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 40  HDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTA 168
           +D   T+++  Y     T++  KK N  NY+DQ+ ++   + A
Sbjct: 524 YDFLTTINATLY-----TFFTYKKLNTPNYVDQHAMIRTDSAA 561


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +1

Query: 37  THDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLLQ 216
           T ++ +  D  F V+  +   PK   N+        L+  +  A       +   P L Q
Sbjct: 13  TAEIDVKEDP-FLVTWQSPTDPKNPKNWIYARKWTQLILVSAFALLGPMASSMVAPCLDQ 71

Query: 217 LFNKFHIEDYTSALSILSISL 279
           + ++FHI++ T    ILSI L
Sbjct: 72  IADRFHIQNSTEKALILSIYL 92


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 450 QYKNNDEFVTICNNLENNRATLI*LMNTMIAMICQTIGFVK 572
           QY   DE V I   + NN+  L+ ++N ++  I + I +VK
Sbjct: 653 QYNYLDELVYILGRMGNNKEALMLIINELLD-IGRAIRYVK 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,047
Number of Sequences: 5004
Number of extensions: 43079
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)