Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120534.Seq
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54439| Best HMM Match : SNF (HMM E-Value=0)                         31   0.81 
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       29   2.5  
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)     29   2.5  
SB_57687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
          Length = 701

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 4   STMEQTCSIGITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ 138
           +T   T +  IT+  T+TV++   VS    +W +K  N +  +DQ
Sbjct: 8   ATYNATTNATITNATTVTVEANGTVSPIVEFWERKVLNISGGLDQ 52


>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 ICHNLQ*FRKQSSYINLTNEYDDSDDMPNHW 562
           + HNLQ  RKQ   I+   E+ D  D  N+W
Sbjct: 344 LAHNLQRHRKQQEEIDDLGEFPDMFDKRNNW 374


>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
          Length = 342

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 555 FGISSLSSYSLVKLM*LDCFLNYC 484
           FG++ L S++++ LM  +C LNYC
Sbjct: 232 FGVTVLLSFTILILMLQECVLNYC 255


>SB_57687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 10  MEQTCSIGITHDVTITVDSRFYVSHSTTYW 99
           ++ TC   IT+   I+VD  FYV+ +  +W
Sbjct: 64  IQPTCDDMITNGQGISVDVHFYVAQTEPFW 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,190
Number of Sequences: 59808
Number of extensions: 322432
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)